EY702515

Overview
NameEY702515
Unique NameEY702515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.796e-52
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +V CMKVWPP G KKFETLSYLP LSD  L KE+ YL+R  WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN   VQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.796e-52
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +V CMKVWPP G KKFETLSYLP LSD  L KE+ YL+R  WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN   VQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.796e-52
Identity = 91/126 (72.22%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +V+CM+VWPP  +KK+ETLSYLP LSDE LL EI YL++ GW+PCLEFE E+G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN   VQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.652e-52
Identity = 91/125 (72.80%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +V CMKVWPP G KKFETLSYLP LSD  L KE+ YL+R  WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN   VQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.770e-52
Identity = 88/124 (70.97%), Postives = 107/124 (86.29%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            +V CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN   VQCISFIA+ P
Sbjct:   52 RVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.770e-52
Identity = 90/126 (71.43%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +++CM+VWP  G+KKFETLSYLPPLS EALLK++ YLIR+ W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN   VQC+SFIA +PPG
Sbjct:   44 RIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.770e-52
Identity = 90/126 (71.43%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +VQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YL++ GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN   VQCISFIA KP G
Sbjct:   55 RVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.770e-52
Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +VQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDN   VQC+SFIA KP G
Sbjct:   56 RVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.770e-52
Identity = 89/126 (70.63%), Postives = 105/126 (83.33%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +V+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL++ GW+PCLEFE E G+VYREH+ SPGYYDGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN   VQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.229e-52
Identity = 91/125 (72.80%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +V CMKVWPP G KKFETLSYLP L+D  L KE+ YL+R  WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN   VQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY702515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RBS3B_ARATH2.796e-5273.60Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS2B_ARATH2.796e-5273.60Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_SOLLC2.796e-5272.22Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_RAPSA3.652e-5272.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TRIRP4.770e-5270.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT4.770e-5271.43Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS2_NICSY4.770e-5271.43Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS1_AMAHP4.770e-5271.43Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS0_SOLTU4.770e-5270.63Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS1B_ARATH6.229e-5272.80Ribulose bisphosphate carboxylase small chain 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702515 ID=EY702515; Name=EY702515; organism=Citrus sinensis; type=EST; length=861bp
CGGAAAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTT
CGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGG
AAATCCATTACCTTATCCGGGCCGGGTGGATTCCCTGCTTGGAATTCGAG
TTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTA
CGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAG
ATGCAACCCAGGTTCTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCA
CATTCATTCGTCCGAATTATCGGATTTGACAACGGGGCGGCGGTGCAGTG
CATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAA
TTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCC
CATAATGATCATTCGACCAATGGGCGTTCGGTTTGCGTTTAATTTGTACT
TAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGGTTTCTCCCACGCGGG
CCGCGGACGCCGCGGCCCCAGGGTCCAAGGAGCCCCCCTCCGCCCGCCCG
CCCCCGCCGCCCCCTCCCCCACGTCGGCCGCGGCTGGGGGCGCCTGCGGC
CGACACCAGAGGGGGGGGCCCCCGAGAGGCGCCAGGCTTACGCCCCGGGG
GGGGCCGCGCGCGCCCTTCTCGGGGGCCGCCCAACACCGTTCCCGGGGCC
GGGGTTTCACCCTGGGGGGGCGGAAACCCGGGGTTTGCCCTTTTAGGCGT
GGGGAGTTCCCGCTTCGCCGGGGGGGGAATAAAAAAGGCGCCCCTCCGCC
CCCTCCGCTGT
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