EY702515

Overview
NameEY702515
Unique NameEY702515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.199e-48
Identity = 85/126 (67.46%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +VQCM+VWPP G KKFETLSYLP L+   L KE+ YL+R+ WIPCLEFELE+G+V+R++   P YYDGRYWTMWKLPM+GCTD+ QVL+E+   +KEYP++F+RIIGFDN   VQCISFIA KP G
Sbjct:   56 RVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.588e-47
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +++CM+VWP  G+KKFETLSYLPPLS E LLK++ YLIR+ W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN   VQ +SFIA+KPPG
Sbjct:   44 RIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.911e-46
Identity = 84/126 (66.67%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +++CM+VWP  G KKFETLSYLPPLS + LLK++ YL+R GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN    QC+SFIA KPPG
Sbjct:   44 RIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.138e-45
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            M+VWPP GLKKFETLSYLPPL+ E LL E++YL+  GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++   VQCISFIA KP G
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.633e-45
Identity = 79/124 (63.71%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            +V+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R  W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN   VQCISFI  KP
Sbjct:   48 RVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.817e-43
Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            +V+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL++  W+PCLEFE E G + R +  SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN   VQCISFI  KP
Sbjct:   64 RVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.016e-43
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   61 SYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +YLPPLS EALLK++ YLIR+ W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN   VQC+SFIA KPPG
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.144e-40
Identity = 77/126 (61.11%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            +++CM+VWP  G KKFETLSYLPPL+ E LLK++ YL+R  W+PCLEF  E G+VYRE+  SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN    Q ++FIA KP G
Sbjct:   43 RIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.686e-38
Identity = 72/125 (57.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    4 KVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNGAAVQCISFIAAKP 375
            +V CM+VW P    KFETLSYLPPLS +AL K+I Y+I++GW PC+EF+++ G V RE    PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN   VQC SFI  +P
Sbjct:   55 RVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.595e-31
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P G
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262          

HSP 2 Score: 136.732 bits (343), Expect = 1.595e-31
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P G
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406          

HSP 3 Score: 136.732 bits (343), Expect = 1.595e-31
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P G
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693          

HSP 4 Score: 136.732 bits (343), Expect = 1.595e-31
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P G
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836          

HSP 5 Score: 136.732 bits (343), Expect = 1.595e-31
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P G
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124          

HSP 6 Score: 134.806 bits (338), Expect = 6.062e-31
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD  YWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P G
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549          

HSP 7 Score: 134.806 bits (338), Expect = 6.062e-31
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+   VQ ISF+  +P
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266          

HSP 8 Score: 132.494 bits (332), Expect = 3.008e-30
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPPG 381
            MKVW P   KKFET SYLPPLSD  + K++  +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+   VQ ISF+  +P G
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980          
The following BLAST results are available for this feature:
BLAST of EY702515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RBS_GOSHI3.199e-4867.46Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA1.588e-4766.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE3.911e-4666.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL1.138e-4569.67Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_PINTH9.633e-4563.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.817e-4363.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT9.016e-4371.96Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_SACHY7.144e-4061.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA6.686e-3857.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_EUGGR1.595e-3150.00Ribulose bisphosphate carboxylase small chains, ch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702515 ID=EY702515; Name=EY702515; organism=Citrus sinensis; type=EST; length=861bp
CGGAAAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTT
CGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGG
AAATCCATTACCTTATCCGGGCCGGGTGGATTCCCTGCTTGGAATTCGAG
TTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTA
CGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAG
ATGCAACCCAGGTTCTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCA
CATTCATTCGTCCGAATTATCGGATTTGACAACGGGGCGGCGGTGCAGTG
CATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAA
TTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCC
CATAATGATCATTCGACCAATGGGCGTTCGGTTTGCGTTTAATTTGTACT
TAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGGTTTCTCCCACGCGGG
CCGCGGACGCCGCGGCCCCAGGGTCCAAGGAGCCCCCCTCCGCCCGCCCG
CCCCCGCCGCCCCCTCCCCCACGTCGGCCGCGGCTGGGGGCGCCTGCGGC
CGACACCAGAGGGGGGGGCCCCCGAGAGGCGCCAGGCTTACGCCCCGGGG
GGGGCCGCGCGCGCCCTTCTCGGGGGCCGCCCAACACCGTTCCCGGGGCC
GGGGTTTCACCCTGGGGGGGCGGAAACCCGGGGTTTGCCCTTTTAGGCGT
GGGGAGTTCCCGCTTCGCCGGGGGGGGAATAAAAAAGGCGCCCCTCCGCC
CCCTCCGCTGT
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