EY702515

Overview
NameEY702515
Unique NameEY702515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.034e-30
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1
Query:  148 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN   VQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.034e-30
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:   19 KVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            KVW P   K++ET SYLPPL+++ + +++ Y+I  GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN   VQC+ F+  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.303e-30
Identity = 62/126 (49.21%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            M VW P   K FET SYLPPLSDE +  ++ Y++  GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN   VQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.929e-30
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            M VW P   K FET SYLPPL+DE +  ++ Y++  GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN   VQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.113e-27
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 RKVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +K + M VW P   K FET SYLPPL+DE + K++ Y++   W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD    VQ   F+  +PP
Sbjct:   39 QKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.066e-27
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 RKVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +K + M VW P   K FET SYLPPL+DE + K++ Y++   W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD    VQ   F+  +PP
Sbjct:   40 KKSREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.310e-27
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            M VW P   K FET SYLPPL+DE + K++ Y++   W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD    VQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.935e-27
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            M VW P   K FET SYLPPL+DE + K++ Y++   W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD    VQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.183e-26
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 RKVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +K + M VW P   K FET SYLPPL+DE + K++ Y++   W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD    VQ   F+  +PP
Sbjct:   39 KKDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.183e-26
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   16 MKVWPPTGLKKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            M VW P   K FET S+LPPL+DE + K++ Y++   W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD    VQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
The following BLAST results are available for this feature:
BLAST of EY702515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RBS_SINAL1.034e-3075.32Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_CHLMO1.034e-3046.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE2.303e-3049.21Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE3.929e-3048.41Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACECL3.113e-2743.18Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_ACECL4.066e-2743.18Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_ACECL5.310e-2744.09Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS4_ACECL6.935e-2744.09Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS7_ACECL1.183e-2642.42Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS3_ACEAT1.183e-2644.09Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702515 ID=EY702515; Name=EY702515; organism=Citrus sinensis; type=EST; length=861bp
CGGAAAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTT
CGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGG
AAATCCATTACCTTATCCGGGCCGGGTGGATTCCCTGCTTGGAATTCGAG
TTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTA
CGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAG
ATGCAACCCAGGTTCTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCA
CATTCATTCGTCCGAATTATCGGATTTGACAACGGGGCGGCGGTGCAGTG
CATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAA
TTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCC
CATAATGATCATTCGACCAATGGGCGTTCGGTTTGCGTTTAATTTGTACT
TAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGGTTTCTCCCACGCGGG
CCGCGGACGCCGCGGCCCCAGGGTCCAAGGAGCCCCCCTCCGCCCGCCCG
CCCCCGCCGCCCCCTCCCCCACGTCGGCCGCGGCTGGGGGCGCCTGCGGC
CGACACCAGAGGGGGGGGCCCCCGAGAGGCGCCAGGCTTACGCCCCGGGG
GGGGCCGCGCGCGCCCTTCTCGGGGGCCGCCCAACACCGTTCCCGGGGCC
GGGGTTTCACCCTGGGGGGGCGGAAACCCGGGGTTTGCCCTTTTAGGCGT
GGGGAGTTCCCGCTTCGCCGGGGGGGGAATAAAAAAGGCGCCCCTCCGCC
CCCTCCGCTGT
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