EY702513

Overview
NameEY702513
Unique NameEY702513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.105e-15
Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  207 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 635
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.591e-15
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  306 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 614
            I+ P +  Y  G     + F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +PNP+DPL  + A +    + ++    R
Sbjct:   67 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.690e-15
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  207 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 530
            KR+ KEL  LQ DPP   +     V   +  W   + G P + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  207 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 530
            KR+ KEL  LQ DPP   +     V   +  W   + G P + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 47/148 (31.76%), Postives = 71/148 (47.97%), Query Frame = 3
Query:  213 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 635
            ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   37 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 58/194 (29.90%), Postives = 88/194 (45.36%), Query Frame = 3
Query:  201 ASKRILKELKDLQKDPPTSCSAG-----------PVAEDMFH-WQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------------------KVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATARSWTQKYAM 638
            A KR+L+E + + K+     SA            PV+ED F+ W A + GP D+ Y    + + I  P +YP +PPK  F                                    ++ HPNI  N G ICLDIL+ +W+PA T+S  L +I  LL DP P  PL  ++A++ K +D   Y +    +  +Y++
Sbjct:    3 AEKRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYYVGRYSI 196          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.000e-15
Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 3
Query:  198 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 635
            M  K ++ E+ +L+ + P +C       +  H     + P +  Y GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  DK  +      + ++YA
Sbjct:   32 MRDKLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  210 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATAR 614
            RI+KE    LK L  D P +        S  P+ E D+  W+A I GP D+PY    F + I  P  YP  PPK++F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P  D PL  +I ++ +  D + Y+   +
Sbjct:   21 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 171          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  192 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 530
            SI A+KR+ KE K++  +PP    A P  +++  W   I GPP +PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of EY702513 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  201 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 539
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPFKPP     T   +    +N  ICL I     E W P+ ++   L+++ + + T PN
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
The following BLAST results are available for this feature:
BLAST of EY702513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2F_HUMAN2.105e-1532.67NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UBC12_YEAST3.591e-1535.92NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2W_MOUSE4.690e-1541.07Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN6.125e-1541.07Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBE2F_BOVIN6.125e-1531.76NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UBCX_PICPA6.125e-1529.90Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UB2FB_MOUSE8.000e-1532.03NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBCX_YEAST1.045e-1434.44Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBC6_KLULA1.045e-1435.34Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC32_ARATH1.045e-1435.90Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702513 ID=EY702513; Name=EY702513; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGCTTGAATAACAAAGGCAAGAGATTGTAGAGGAGAGAGGT
CGGGACGGCCAGTAGCCGCCGCAGATCTGCTCCGAAGCCGTTCCCCTTTC
TCACTGCTATTGCCCTCCGATCTCCTTCTTCGGCGGACAAGTGTTGCAGA
TCCTAGGTTTGTTGTGGCTTTAACTTTTAATAATCCGTTGAAGCATCATG
GCTTCGAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCC
CACGTCTTGCAGCGCTGGTCCGGTGGCTGAAGACATGTTCCATTGGCAAG
CAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGAGGTGTATTTTTG
GTTACCATTCATTTTCCTCCAGATTATCCCTTCAAGCCCCCAAAGGTTGC
TTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCAATGGAAGCATAT
GTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTTACCATTTCAAAG
GTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAATCCTGACGACCC
GCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACAAGGCCAAATATG
AAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATGGGATAGTTGTTT
GGATATTGCAGAAATGGAACNTCATTATATGGAATATGGTGGGGTTTTTT
CTCCTTTTTCTTCAATCCTGCTTCGGGAGGGGATGGTTTGTATTTTTATA
ATGAGGAAGATGGTTGGGGAGGAGTTGCAGGGCAAGACAATTTGGTAATG
GGGATGGTTATTGGTTGAACCCCATCATTCATGGGGTTTGTGGCCCAAAA
AAAAAAAAAGGCGGCGCC
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