EY702511

Overview
NameEY702511
Unique NameEY702511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.797e-74
Identity = 134/180 (74.44%), Postives = 149/180 (82.78%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            MASSMISS  V T NRA    A  VAPFTGLKS +GFP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCI FIA KPP
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.797e-74
Identity = 133/181 (73.48%), Postives = 152/181 (83.98%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            MASS+ISSA VAT  R ++AQASMVAPF GLKS+  FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCI FIA KPPG
Sbjct:    1 MASSVISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 2.797e-74
Identity = 132/180 (73.33%), Postives = 151/180 (83.89%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            MASSM+SSA V T    S AQA+MVAPFTGLKSSS FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCI FIA KPP
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.230e-74
Identity = 128/182 (70.33%), Postives = 149/182 (81.87%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPGG 554
            MASSM+S+A +AT    + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+ FIA KP GG
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAGG 182          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.137e-74
Identity = 130/181 (71.82%), Postives = 155/181 (85.64%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS++ FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCI FIA KP G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.137e-74
Identity = 131/182 (71.98%), Postives = 156/182 (85.71%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQA-SMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            MASS+ISSA VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCI FIA KP G
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.137e-74
Identity = 130/181 (71.82%), Postives = 155/181 (85.64%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS++ FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCI FIA KP G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 1.063e-73
Identity = 130/179 (72.63%), Postives = 151/179 (84.36%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASSM+SSA VAT NR   AQASMVAPF GLKS + FP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCI FIA KP
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.367e-73
Identity = 130/179 (72.63%), Postives = 151/179 (84.36%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASS++S+ATVAT   A+ AQASM+A F GLKS++ FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCI FIA KP
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.888e-73
Identity = 125/181 (69.06%), Postives = 155/181 (85.64%), Query Frame = 3
Query:    9 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASSM+S+A VAT  A+R++ AQASMVAPFTGLKS S FP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+ FIA KP
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
The following BLAST results are available for this feature:
BLAST of EY702511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_GLYTO2.797e-7474.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PETHY2.797e-7473.48Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_BRANA2.797e-7473.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_AMAHP6.230e-7470.33Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC8.137e-7471.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU8.137e-7471.98Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_NICSY8.137e-7471.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR1.063e-7372.63Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CAPAN2.367e-7372.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR6.888e-7369.06Ribulose bisphosphate carboxylase small chain 6, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702511 ID=EY702511; Name=EY702511; organism=Citrus sinensis; type=EST; length=902bp
GAAGACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCG
AACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCT
CAAGTCTTCTTCTGGTTTCCCAGCAACCAAGAAGACCAACAATGACATTA
CTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCA
CCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTC
CGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGA
TTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCAC
CACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCT
GCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGG
AGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGAC
AACAAGCGTCAAGTGCAGTGCATCAGGTTCATTGCTGCCAAGCCACCAGG
GGGCTAGGGTCCCAATAAAATTGTGGACCACCCATGCAATATTGGTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCCATCAAGGGGGGTCCGGG
TTGGGGTTAAATTTGTACTTAAGGTGCTGGTGCTGCTGCTACAACTTTTT
GCGTTTCCCCCCCACTTTGGGCTGCTTTTTTTTTTTTTAATAAAATCTGA
ATAATGGAACCCTTGGGTCAACTTCATTAAACTGGGCGCCGGAGTTCCAG
TTAATGGAGGGAAATACTGGGATTAAAAAAAAAGTTTATGGTCTTGGCAA
AAAAAAAAAAAAAGGGGGGCGCCTCAAGAAGACCAAGGTATTCACCCGGG
AT
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