EY702511

Overview
NameEY702511
Unique NameEY702511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.780e-71
Identity = 129/181 (71.27%), Postives = 148/181 (81.77%), Query Frame = 3
Query:    9 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS + FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+ FIA KP
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 6.447e-71
Identity = 120/174 (68.97%), Postives = 150/174 (86.21%), Query Frame = 3
Query:   30 SATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            S++VAT +R + AQA+MVAPFTGLKS++ FP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++  L KE++YL+R  W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.420e-71
Identity = 122/174 (70.11%), Postives = 151/174 (86.78%), Query Frame = 3
Query:   30 SATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            S+TVAT +RA+ AQA+MVAPFTGLKS++ FPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.436e-70
Identity = 124/179 (69.27%), Postives = 148/179 (82.68%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASS++S+A    A   + AQA+MVAPF GLKS S FP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+ FIA KP
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.200e-70
Identity = 126/179 (70.39%), Postives = 148/179 (82.68%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASSM++S   A   RA  AQ+SMVAPF GL+SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCI FIA KP
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.200e-70
Identity = 126/177 (71.19%), Postives = 147/177 (83.05%), Query Frame = 3
Query:   15 SSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            +SM+S+A V    R + AQASMVAPFTGLKS S FP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCI FIA KP
Sbjct:    2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.179e-70
Identity = 121/174 (69.54%), Postives = 150/174 (86.21%), Query Frame = 3
Query:   30 SATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPPG 551
            S+TVAT +RA+ AQA+MVAPFTGLKS+  FPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.709e-69
Identity = 124/177 (70.06%), Postives = 149/177 (84.18%), Query Frame = 3
Query:   15 SSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            +S++S+A V TA+ A  AQA+MVAPF+GLKS+S FP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEINYL+  GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCI FIA KP
Sbjct:    2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.709e-69
Identity = 124/179 (69.27%), Postives = 146/179 (81.56%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASSM++S   A   R   AQ +MVAPF GL+SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCI FIA KP
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.538e-69
Identity = 124/179 (69.27%), Postives = 148/179 (82.68%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            MASS    ++VATA RA+ AQASMVAPF GLKS+S FP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+ FI  KP
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of EY702511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_AMAHP3.780e-7171.27Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HELAN6.447e-7168.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_FLAPR8.420e-7170.11Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_MESCR1.436e-7069.27Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS5_LEMGI3.200e-7070.39Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_MESCR3.200e-7071.19Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_FLAPR4.179e-7069.54Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SILPR2.709e-6970.06Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI2.709e-6969.27Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS3_FRIAG3.538e-6969.27Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702511 ID=EY702511; Name=EY702511; organism=Citrus sinensis; type=EST; length=902bp
GAAGACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCG
AACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCT
CAAGTCTTCTTCTGGTTTCCCAGCAACCAAGAAGACCAACAATGACATTA
CTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCA
CCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTC
CGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGA
TTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCAC
CACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCT
GCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGG
AGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGAC
AACAAGCGTCAAGTGCAGTGCATCAGGTTCATTGCTGCCAAGCCACCAGG
GGGCTAGGGTCCCAATAAAATTGTGGACCACCCATGCAATATTGGTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCCATCAAGGGGGGTCCGGG
TTGGGGTTAAATTTGTACTTAAGGTGCTGGTGCTGCTGCTACAACTTTTT
GCGTTTCCCCCCCACTTTGGGCTGCTTTTTTTTTTTTTAATAAAATCTGA
ATAATGGAACCCTTGGGTCAACTTCATTAAACTGGGCGCCGGAGTTCCAG
TTAATGGAGGGAAATACTGGGATTAAAAAAAAAGTTTATGGTCTTGGCAA
AAAAAAAAAAAAAGGGGGGCGCCTCAAGAAGACCAAGGTATTCACCCGGG
AT
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