CX301108

Overview
NameCX301108
Unique NameCX301108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 80/186 (43.01%), Postives = 119/186 (63.98%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQ--LIXXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRY+ +P    K+ KA G++LR+H+K+TRE   AIK   L+ AQ++L+NV + K+ +P  ++ GG+GR A  K +     +  WP+K+    L LLKN E+NA+ +GL+VD+LVV H+  N+AP +RRRTYRAHGRIN YMSSP HI+  L              P   +LS+K++ + + K ++
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTSVGR--WPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLTEKEDVVTKAAENEPAKKKLSKKKLQRQKEKMMR 184          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.213e-38
Identity = 73/150 (48.67%), Postives = 106/150 (70.67%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQL 475
            MGRYS +P V +K  KA G++LR+H+K+TRE   AIK  +L+ AQ +L+NV   K+ +P  ++ GG+GR +  K++     +  WP+K+    L +L+N ESNA+  GL+VD+LV+ H+  N+AP +RRRTYRAHGRIN YMSSP HI++
Sbjct:    1 MGRYSREPDVASKTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAKQWGTTQGR--WPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEM 148          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.213e-38
Identity = 76/151 (50.33%), Postives = 109/151 (72.19%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVS-WPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQL 475
            MGRY+ +P   +K+ K+ G++LR+H+K+TRE   AIK   L+ AQ +L+NV++ K+ +P  ++ GG+GR A  K +   G  V  WP+K+    L LLKN E+NA+ KGL+VD+LV++H+  N+AP +RRRTYRAHGRIN YMSSP HI+L
Sbjct:    1 MGRYAKEPDNASKSCKSRGSNLRVHFKNTRETALAIKRMPLRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKHW---GTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEL 148          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.890e-38
Identity = 78/186 (41.94%), Postives = 119/186 (63.98%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI--XXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRYS +P+  TK+ KA G++LR+H+K+TRE    I    L+ A ++L+NV    + +P  +Y GG+GR A  K++     +  WP+K+    L LLKN ESNA+ +GL+ D+LV+ H+  N+AP++RRRTYRAHGRIN YMSSP HI++I               P   ++S+K++A+ + K ++
Sbjct:    1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGR--WPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILSERERVVAKPREDEPHKKKISKKKLARAKEKMLR 184          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 80/188 (42.55%), Postives = 118/188 (62.77%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI----XXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRYS  P+   K+ KA G++LR+H+K+T E   AI+   L+ A  YL+NV + K+ IP  ++ GG+GR A  K++     +  WP+K+    L LL+N ESNA+ KGL+VD+LV+ H+  N+AP +RRRTYRAHGRIN YMSSP HI++                  P   +LS+K++A+ + K ++
Sbjct:    1 MGRYSRDPENPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTQGR--WPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKKLSKKKLARQKEKMMR 186          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 72/150 (48.00%), Postives = 105/150 (70.00%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQL 475
            MGRYS +P++  K+ KA G++LR+H+K+T E  NAI+   LK A  YL+NV+  K+ +P  ++ GG+GR A  K++     +  WP+K+    L +L+N ESNA+  GL+VD+LV+ H+  N+A  +RRRTYRAHGRIN YMSSP HI++
Sbjct:    1 MGRYSREPEIAAKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAKQWGTTQGR--WPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEM 148          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.446e-37
Identity = 79/188 (42.02%), Postives = 118/188 (62.77%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI----XXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRYS +P    K+ KA G++LR+H+K+T E   AI+   L+ A  YL+NV++ K+ IP  ++ GG+GR A  K++     +  WP+K+    L LL+N ESNA+ K L+VD+LV+ H+  N+AP +RRRTYRAHGRIN YMSSP HI++                  P   +LS+K++A+ + K ++
Sbjct:    1 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGR--WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKKLSKKKLARQKEKMMR 186          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 78/186 (41.94%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI--XXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRYS +     K+ KA G +LR+H+K+T E   AIK   L+ AQ YL+ V+  K+ +P  ++ GG+GR A  K++K    +  WP+K+    L LL+N E+NA+ KGL+ D+LVV H+  N+A  +RRRTYRAHGRIN YMSSP H+++I               PT  +LS+K++ + + K ++
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAKQWKTTQGR--WPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILTEKEEVVSKATDDEPTKKKLSKKKLQRQKEKMLR 184          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 75/148 (50.68%), Postives = 102/148 (68.92%), Query Frame = 2
Query:   35 YSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            YS  P+  TK+ KA G+ LR+H+K+T E   A++G  L+ AQ +L +V + K+ +P  ++ GGIGR A  K++     +  WP K+    LDLLKN ESNAE KGL+VD LV+ H+N  +A K+RRRTYRAHGRIN YMSSP HI++I
Sbjct:    6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGR--WPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVI 151          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 77/186 (41.40%), Postives = 115/186 (61.83%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI--XXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRYS +     K+ KA G +LR+H+K+T E   AIK   L+ AQ YL+ V+  K+ +P  ++ GG+GR A  K++K    +  WP+K+    L LL+N E+NA+ KGL+ D+LVV H+  N+A  +RRRTYRAHGRIN YMSSP H+++I               P   +LS+K++ + + K ++
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAKQWKTTQGR--WPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILTEKEELVSKATDDEPAKKKLSKKKLQRQKEKMLR 184          
The following BLAST results are available for this feature:
BLAST of CX301108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL17_AEDAE1.694e-3843.0160S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17_CARGR2.213e-3848.6760S ribosomal protein L17 OS=Carabus granulatus GN... [more]
RL17_ANOGA2.213e-3850.3360S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_DIACI2.890e-3841.9460S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_LONON1.873e-3742.5560S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_AGRLI1.873e-3748.0060S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_BOMMO2.446e-3742.0260S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_DROYA3.195e-3741.9460S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_CAEEL5.450e-3750.6860S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_DROME1.214e-3641.4060S ribosomal protein L17 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC08005H01SK PhyRootSw1 Citrus sinensis cDNA clone C08005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301108 ID=CX301108; Name=CX301108; organism=Citrus sinensis; type=EST; length=718bp
GCCTCGTGCCGAATTCGGCACGAGGATGGGACGCTACAGTGCTAAGCCAA
AGGTTGAAACAAAAGCAGCAAAAGCTTCTGGAACTCATTTAAGAATCCAT
TACAAACACACCCGCGAGATTGGTAATGCCATCAAGGGACGTGCTTTGAA
GAATGCCCAAGAGTACTTGGAAAATGTCCTTCAATTCAAGGATGCCATTC
CAGTCACTAAATACACTGGTGGTATCGGCAGACACGCCATCGGTAAGAAG
TACAAGGCCCCTGGAGACAAGGTGTCTTGGCCACAGAAGGCTACCCGAAC
TTTCCTCGATTTATTGAAGAACGTCGAGTCTAACGCCGAAGCCAAGGGAT
TGGAGGTTGATAAGTTAGTTGTTTCTCACGTTAACTGCAACCAGGCCCCT
AAGATGAGACGAAGAACATACAGAGCTCACGGCCGCATCAACGCATACAT
GTCCTCCCCTGCCCACATTCAATTAATCGTTGAGGAGAAGCAAGAGGAAG
TCGCCAAGGCCGAGGAACCAACTGCTGCTCGCTTATCTCGCAAGCAAATC
GCTCAAGGTCGTGGAAAGTCTGTGAAGGTTGGAGGTGATGTTTAAATATA
TACATCGCAATCACCTCACTGTATTATATTCTCTGCCTTAATCACTGCTA
GCCTCACATGTAATACTAGCTCAACTATTAACATCCCATGATGACTGATG
AAATAACTAGTTGTAACA
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