CX301108

Overview
NameCX301108
Unique NameCX301108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_HYPBU (50S ribosomal protein L22P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 48/142 (33.80%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   56 ETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRH-AIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            E K+AKA      I YK   E+   +KG  +  A+ +LE V + ++ IPV +Y+G    H  +  KYK P  +  +P KA +  L LL NV +NAE KGL+ ++L + H+  ++   ++R   RA GR        +HI+++
Sbjct:   12 EEKSAKAMVWDAPISYKKIVELARLLKGMKVDEARRFLERVARGEEPIPVRRYSGKQAHHRGLAAKYKWPIGR--YPVKAAKILLRLLDNVTNNAEVKGLDTERLRIVHIAVHKGRVLKRWMPRAFGRATPKFKKYSHIEIV 151          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 47/139 (33.81%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   62 KAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            + A+ASG  LRI  KH+ E+   I+G  L +A  YL++V+  K  +P+ ++    G H  GK +  PG    +P K  +    +L N ++NAE KGL+VD+L + H   ++ P +R    RA GR   +     HI+++
Sbjct:   17 RMARASGRDLRISPKHSVELLREIRGMMLNDALRYLDDVIAKKRPVPMKRFNDSQG-HKPGKGF-GPG---RYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIV 150          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_HALMA (50S ribosomal protein L22P OS=Haloarcula marismortui GN=rpl22p PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 47/149 (31.54%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   35 YSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPG-DKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            YS +   +T  AKA     ++ +KH++ I   IKG+    A +YLE V++    +P  ++  G+G      K K  G D   +P+KA++ FLDLL+N   NA+ +G + + + + HV  ++  + + R  RA GR +A+ S    ++LI
Sbjct:    5 YSVEADPDT-TAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGH-----KSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELI 147          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_CALMQ (50S ribosomal protein L22P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   68 AKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDK---VSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            AKA G   RI +K   E   AI+   +K A++Y+E V   K  IP+ ++T     H +      P D      WP K   +FL +L+N+ESNA  +GL +D  V+ H + ++  ++R    RA GR   +     +I+L+
Sbjct:   29 AKARGFEFRISWKKAIETARAIRFLTIKQAEDYMEKVKDLKAPIPIKEFTRKQAHHNV------PWDGWPVAKWPVKVADSFLQVLRNLESNASYRGLNIDNTVIVHASASRGMRIRNYMPRALGRATPWFQDTVNIELV 162          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_METTP (50S ribosomal protein L22P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGI-GRHAIGKKYKAPGDKVSW-----PQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            MGR +     E + A+A G  L I  KH REI  AI+G  ++ A+ +L++V+  K A+P  +Y   +  RH +          V W     PQKA R  L +L+N   NAE KGLE ++LV+ + N  +    R    RA GR          I++I
Sbjct:    1 MGRLNYSITPEGRFARAMGVELPISPKHAREICRAIRGMKVEAAERFLQDVIALKRAVPFRRYNRNVPHRHGL----------VGWPAGRFPQKAARAVLRVLENAIGNAEYKGLEKERLVIGYANTKKGRTFRGWMPRAMGRATPKNQETVSIEMI 147          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   32 RYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            +Y+ +   ET +AKA G+ L I  K +RE+  AIKG     A++YLE+V+  K A+P  ++   +G        K P     +P K     L LLKN ESNAE KGL  + + ++H   N+   +     RA GR +   +   ++++I
Sbjct:    5 KYTTELDAET-SAKAMGSELHISPKKSRELCKAIKGMRTNAARQYLEDVVILKQAVPFGRHNDSLGHR------KGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMI 146          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = 2
Query:   53 VETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            V+   A+A      I  K    I + I+G  L  A++ LE+V+  K AIP  +Y   +  H  GK    PG    +P KA + F+DLL NVE+NAE KG+  D L++ HV  N+   +++ T +A+GR  A      ++++I
Sbjct:    8 VDENNARARIVEADISLKDAVNIAHHIRGMKLDYAKQILEDVVSKKYAIPYFRYLDSVS-HRPGK---GPG---RYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVI 142          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   32 RYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            RYS + + E + AKAS   + + YK T E    IKG++++ A+  L  + + K ++P+ +Y   +G  +       PG    +P K  +  L LL N+E+NAE KGL V+ L + H   ++  K+R    RA GR   Y     H+++I
Sbjct:    5 RYSVELEPE-RTAKASLRDVSMSYKLTVETLRLIKGKSIEEARRILTEIAEMKRSVPLKRYNKKVGHRS---DVPGPG---RYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEII 146          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_PYRHO (50S ribosomal protein L22P OS=Pyrococcus horikoshii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   17 GTRMGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            G R G YS +     + A+ASG  LRI  K   E+   ++G  L +A  YL+ V+  K  +P+ +Y    G H  GK +  PG    +P K  +    +L N ++NAE KGL+ DKL + H+  ++ P +R    RA GR   +     HI+++
Sbjct:    2 GKRFG-YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDEVIALKRPVPLRRYNDSQG-HKPGKGF-GPG---RYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAHRGPVLRGWYPRAFGRATPFNEQTTHIEVV 149          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_METVS (50S ribosomal protein L22P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = 2
Query:   59 TKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIP-------VTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            +K AKA G  LRI  KH  EI   I G  L+ A  +L  VL  +  +P       V    G IG HA G+          +PQKAT   L +L N + NAE KGL  +KL + H++ N+   ++R   RA GR +       HIQ+I
Sbjct:   13 SKTAKAMGRTLRISKKHALEICREINGMKLETAVSFLNRVLALETPVPFKVHNKDVPHRKGKIGTHA-GR----------FPQKATEEILKVLDNAKKNAEYKGLNTEKLRIKHISSNKGFIIKRFMPRAFGRASPKYQETIHIQVI 148          
The following BLAST results are available for this feature:
BLAST of CX301108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL22_HYPBU3.437e-1533.8050S ribosomal protein L22P OS=Hyperthermus butylic... [more]
RL22_PYRKO5.863e-1533.8150S ribosomal protein L22P OS=Pyrococcus kodakarae... [more]
RL22_HALMA7.658e-1531.5450S ribosomal protein L22P OS=Haloarcula marismort... [more]
RL22_CALMQ7.658e-1532.1450S ribosomal protein L22P OS=Caldivirga maquiling... [more]
RL22_METTP1.306e-1433.7650S ribosomal protein L22P OS=Methanosaeta thermop... [more]
RL22_METBU1.306e-1432.8950S ribosomal protein L22P OS=Methanococcoides bur... [more]
RL22_THEVO2.228e-1434.5150S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_THEPD2.228e-1432.2150S ribosomal protein L22P OS=Thermofilum pendens ... [more]
RL22_PYRHO2.228e-1433.1250S ribosomal protein L22P OS=Pyrococcus horikoshi... [more]
RL22_METVS3.800e-1436.7350S ribosomal protein L22P OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionC08005H01SK PhyRootSw1 Citrus sinensis cDNA clone C08005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301108 ID=CX301108; Name=CX301108; organism=Citrus sinensis; type=EST; length=718bp
GCCTCGTGCCGAATTCGGCACGAGGATGGGACGCTACAGTGCTAAGCCAA
AGGTTGAAACAAAAGCAGCAAAAGCTTCTGGAACTCATTTAAGAATCCAT
TACAAACACACCCGCGAGATTGGTAATGCCATCAAGGGACGTGCTTTGAA
GAATGCCCAAGAGTACTTGGAAAATGTCCTTCAATTCAAGGATGCCATTC
CAGTCACTAAATACACTGGTGGTATCGGCAGACACGCCATCGGTAAGAAG
TACAAGGCCCCTGGAGACAAGGTGTCTTGGCCACAGAAGGCTACCCGAAC
TTTCCTCGATTTATTGAAGAACGTCGAGTCTAACGCCGAAGCCAAGGGAT
TGGAGGTTGATAAGTTAGTTGTTTCTCACGTTAACTGCAACCAGGCCCCT
AAGATGAGACGAAGAACATACAGAGCTCACGGCCGCATCAACGCATACAT
GTCCTCCCCTGCCCACATTCAATTAATCGTTGAGGAGAAGCAAGAGGAAG
TCGCCAAGGCCGAGGAACCAACTGCTGCTCGCTTATCTCGCAAGCAAATC
GCTCAAGGTCGTGGAAAGTCTGTGAAGGTTGGAGGTGATGTTTAAATATA
TACATCGCAATCACCTCACTGTATTATATTCTCTGCCTTAATCACTGCTA
GCCTCACATGTAATACTAGCTCAACTATTAACATCCCATGATGACTGATG
AAATAACTAGTTGTAACA
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