CX301108

Overview
NameCX301108
Unique NameCX301108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = 2
Query:   26 MGRYSAKPKVET-KAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            MG+   K +V   K A+A G ++ I  KH REI  +I G  L  A ++LE+V+  +  +   ++   +G H  GK     G    +P KA +  L +L++ ++NAE KGL  +KL + H++ N+   ++R   RA GR         HIQ+I
Sbjct:    4 MGKLKYKIQVNPEKTARAMGRNIPISRKHAREICKSINGMKLDEAIKFLEDVIAMRRPVLFRRHCKKVG-HRKGKLGWPAG---RYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVI 151          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   56 ETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHA-IGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            E K AKA    +    +    +  AI+G  L +A+++L  VL+ K+A+P  +Y  G    + I  K+K    +  +P+KA R  L +L+N E+NA  KGL+VDKL++ H+  ++   ++R   RA GR  A     ++I++I
Sbjct:   13 ELKIAKAVIRDVPESIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGR--YPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVI 152          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   35 YSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            YS K   ET  +KA G+ L I  K +RE+   IKG  +  A+++LE+V+  K A+P  ++  G G        K P     +P  A++  L +L+N ESNAE KGLE   + ++H    +   +R    RA GR     +   +I++I
Sbjct:    6 YSVKEDPET-TSKAMGSELHISPKKSREVCCKIKGMKVPEARKFLEDVIALKQAVPFKRHHDGSGHR------KGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMI 146          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_PYRCJ (50S ribosomal protein L22P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   68 AKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVS-WPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            AKA     R+ +K + E+   IKG  LK A+ +LE+V++ K  IP+  +      HA   +    G  V+ WP K  + +L LL+N+E+NA+ KGL+V++LV+ H   ++  K+     RA GR   +     +++++
Sbjct:   31 AKAYAPEQRMSWKKSVEVARFIKGMTLKQAKAWLEDVVKLKRPIPIKTFKKKQAHHATPWE----GWPVAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVNVEIV 164          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_THENV (50S ribosomal protein L22P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 43/149 (28.86%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   32 RYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            +Y  K   E + AKA     ++ +K + E+   I+G  L+ A+ +LE+V++ K  IP+  +      HA      +      WP K  R FLDLL+N+E+NA  +GL+V+++V+ H   ++  ++     RA GR   +     ++++I
Sbjct:   21 KYGVKVSAE-QIAKAYAPEQKMSWKKSVEVARFIEGMTLRQAKSWLEDVVKMKRPIPIRTFKKKQAHHATPW---SGWPVAKWPVKVARRFLDLLENLENNARFRGLDVERVVIVHAAAHKGYRIHNIMPRAFGRATRFDEQTVNVEVI 165          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   26 MGR---YSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            MGR   YS +     + A+ASG  LRI  K   E+   ++G  L +A  YL++V+  +  +P+ +Y    G H  GK +  PG    +P K  +    +L N ++NA+ KGL+ DKL + H+  ++ P +R    RA GR   +     HI+++
Sbjct:    1 MGRRFDYSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQG-HKPGKGF-GPG---RYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVV 149          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_NITMS (50S ribosomal protein L22P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 47/155 (30.32%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   26 MGR--YSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVS--WPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            MGR  Y+ +    T+  ++S     + +KH RE+  AIKG +++ A++YL+ V+    A+   +Y   +G       +KA    +S  +PQK  R F+ +L N+ESNAE KG+++D+L + +   ++   ++R   RA GR     +   H++L+
Sbjct:    1 MGRFGYAFQNYDATRHVRSSVREKDMSHKHAREVAVAIKGLSIEKARDYLQAVVNKDRAVAFRRYKNQVG-------HKADPGMMSGRYPQKTAREFIKVLDNLESNAEYKGMDLDRLKIVNATVHKGVIVKRFIPRAMGRATPKNNVLTHVELV 148          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_PYRAE (50S ribosomal protein L22P OS=Pyrobaculum aerophilum GN=rpl22p PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 2
Query:   68 AKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVS-WPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            A+A     R+ +K + E+   IKG  LK A+ +LE+V++ K  +P+  +      HA   +    G  V+ WP K  R FL +L+N+E+NA  +GL+VD++V+ H   ++  K+     RA GR   +     +++L+
Sbjct:   32 ARAYAPEQRMSWKKSVEVARFIKGMTLKQAKTWLEDVVKLKRPVPIKTFKKKQAHHATPWE----GWPVAKWPVKVARRFLQVLENLENNARFRGLDVDRVVIVHAAAHKGFKIPNIMPRAFGRATRFDEQTVNVELV 165          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 44/142 (30.99%), Postives = 80/142 (56.34%), Query Frame = 2
Query:   56 ETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIG-RHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            E K AKA   ++    +    +  AI+G  L +A+++L NVL+ K+A+P  K++ G   R  I  K+K    +  +P+KA +  L +L+N E+NA +KGL+++ + + H+  ++   ++R   RA GR        +HI++I
Sbjct:   13 ENKLAKAVIKNVPASIRDLYNVCKAIRGMKLNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGR--YPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVI 152          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 2
Query:   62 KAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            + A+AS   LRI  K   E+   ++G  L +A  YL++V+  K  +P+ +Y    G H  GK +  PG    +P K  +    +L NV++NA  KGL+ DKL + H+  ++ P +R    RA GR   +     HI+++
Sbjct:   16 RMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQG-HKPGKGF-GPG---RYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVV 149          
The following BLAST results are available for this feature:
BLAST of CX301108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL22_METJA3.800e-1432.8950S ribosomal protein L22P OS=Methanocaldococcus j... [more]
RL22_SULSO6.483e-1433.1050S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_METBF8.467e-1433.1150S ribosomal protein L22P OS=Methanosarcina barke... [more]
RL22_PYRCJ1.444e-1331.8850S ribosomal protein L22P OS=Pyrobaculum calidifo... [more]
RL22_THENV1.886e-1328.8650S ribosomal protein L22P OS=Thermoproteus neutro... [more]
RL22_PYRAB3.217e-1331.8250S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_NITMS3.217e-1330.3250S ribosomal protein L22P OS=Nitrosopumilus marit... [more]
RL22_PYRAE4.202e-1331.1650S ribosomal protein L22P OS=Pyrobaculum aerophil... [more]
RL22_SULTO5.488e-1330.9950S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_PYRFU5.488e-1332.3750S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionC08005H01SK PhyRootSw1 Citrus sinensis cDNA clone C08005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301108 ID=CX301108; Name=CX301108; organism=Citrus sinensis; type=EST; length=718bp
GCCTCGTGCCGAATTCGGCACGAGGATGGGACGCTACAGTGCTAAGCCAA
AGGTTGAAACAAAAGCAGCAAAAGCTTCTGGAACTCATTTAAGAATCCAT
TACAAACACACCCGCGAGATTGGTAATGCCATCAAGGGACGTGCTTTGAA
GAATGCCCAAGAGTACTTGGAAAATGTCCTTCAATTCAAGGATGCCATTC
CAGTCACTAAATACACTGGTGGTATCGGCAGACACGCCATCGGTAAGAAG
TACAAGGCCCCTGGAGACAAGGTGTCTTGGCCACAGAAGGCTACCCGAAC
TTTCCTCGATTTATTGAAGAACGTCGAGTCTAACGCCGAAGCCAAGGGAT
TGGAGGTTGATAAGTTAGTTGTTTCTCACGTTAACTGCAACCAGGCCCCT
AAGATGAGACGAAGAACATACAGAGCTCACGGCCGCATCAACGCATACAT
GTCCTCCCCTGCCCACATTCAATTAATCGTTGAGGAGAAGCAAGAGGAAG
TCGCCAAGGCCGAGGAACCAACTGCTGCTCGCTTATCTCGCAAGCAAATC
GCTCAAGGTCGTGGAAAGTCTGTGAAGGTTGGAGGTGATGTTTAAATATA
TACATCGCAATCACCTCACTGTATTATATTCTCTGCCTTAATCACTGCTA
GCCTCACATGTAATACTAGCTCAACTATTAACATCCCATGATGACTGATG
AAATAACTAGTTGTAACA
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