CX301099

Overview
NameCX301099
Unique NameCX301099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   40 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 336
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +    S  VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   43 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 333
            S ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  157 SAFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   46 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 291
            ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  158 DFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   46 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 291
            ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  158 DFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_SHEDO (Triosephosphate isomerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.613e-21
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   13 EETKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 309
            EE   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  153 EELDIVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.613e-21
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   58 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 333
            VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  162 VVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKKDATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKAAAAAK 253          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_AZOPC (Triosephosphate isomerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.613e-21
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   58 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 318
            ++LAYEPVWAIGTG+ ATP Q QE+H  +R+ L DN    +A  T I+YGGS N  N KEL   PDVDG L+GGASLK + F+ II++
Sbjct:  163 IILAYEPVWAIGTGRTATPVQVQEMHIFIRQILIDNYGQAIANETSILYGGSCNAGNAKELFINPDVDGGLIGGASLKVDTFLSIIEA 250          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.106e-21
Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   31 AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 291
            AE+I+    VV+AYEPVWAIGTGKVA+ A AQEV   +R  L +    EVAA  R++YGGSVN  N  EL AQPDVDG LVGGASLK
Sbjct:  161 AEQIAK---VVIAYEPVWAIGTGKVASAADAQEVCGAIRAELAELAGPEVAAQVRVLYGGSVNAKNVGELVAQPDVDGALVGGASLK 244          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_SHESH (Triosephosphate isomerase OS=Shewanella sediminis (strain HAW-EB3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   13 EETKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 321
            EE   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +   A
Sbjct:  153 EELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNSTEFLSLCSIA 257          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_SHEAM (Triosephosphate isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   13 EETKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 321
            EE   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +R+ L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +   A
Sbjct:  153 EELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRRRLSE-VSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLTLCSIA 257          
The following BLAST results are available for this feature:
BLAST of CX301099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HAEI89.454e-2257.00Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_ENT389.454e-2257.43Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_BACFR1.235e-2158.54Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN1.235e-2158.54Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_SHEDO1.613e-2153.92Triosephosphate isomerase OS=Shewanella denitrific... [more]
TPIS_ERWT91.613e-2160.42Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_AZOPC1.613e-2156.82Triosephosphate isomerase OS=Azobacteroides pseudo... [more]
TPIS_NOCFA2.106e-2163.22Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_SHESH2.751e-2151.89Triosephosphate isomerase OS=Shewanella sediminis ... [more]
TPIS_SHEAM2.751e-2151.89Triosephosphate isomerase OS=Shewanella amazonensi... [more]

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Properties
Property NameValue
Genbank descriptionC08005G03SK PhyRootSw1 Citrus sinensis cDNA clone C08005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301099 ID=CX301099; Name=CX301099; organism=Citrus sinensis; type=EST; length=577bp
GGAATTCGGCACGAGGAAACAAAAGCAATCGCAGAAAAAATATCCAACTG
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAGACCA
AGCTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCTTTCTGGA
AACTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCG
AGTATAATAAGTTAAATTTTCAGAATTGTTAAGAATCTCTTTCCTATTTC
AGTGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGTTTGCTTTTC
CCTTCTTGCAAAAAAAAAAAAAAAAAA
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