CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 69/127 (54.33%), Postives = 99/127 (77.95%), Query Frame = 3
Query:  102 KFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +++ T G+ V  ++ CADN+GAK L  I V   +GRLN+LP+A+ GD+ + S KKGKPELRKKVH A+++RQ+K WRR +G +I FEDNA V++NNKGE++G+ +AGPV +E AD+WP+I+S + SI
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPKISSQASSI 145          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.037e-32
Identity = 65/130 (50.00%), Postives = 93/130 (71.54%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G+  R T GLP+GA + CADNTGA+S+ +I V    G+  ++P+A VGD+ MAS KKG PE+R KV  AV++RQ++ +RR +G  + FEDNA V+V   GE++GS + GPVA+E A+ WPRIA+ +  I+
Sbjct:    3 GIAGRQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 70/139 (50.36%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   69 MGKGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            M KG  GA G +     GL VG+ V  ADN+GAK  MII V G KGRL ++P A+VGD+V+ + KKG PE+RK+V  A+++RQR+ +RR +G +I FEDNA VIV+  G  KGS + GPVA+E A+ WP++A+ +  I+
Sbjct:    1 MPKGAAGA-GPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPKVANIASIII 138          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G+  R T GLP+GA++ C DNTGAK + +I V  +     ++P+A VGD+ +AS KKG PE+R KV  AV+VRQR+ +RR +G  I FEDNA V+V   GE++GS + GPVA+E A+ WPRIA+ S +I+
Sbjct:    3 GISGRETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAISSTIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.320e-31
Identity = 69/130 (53.08%), Postives = 93/130 (71.54%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            K + G V  ++    GL VG+ V  ADN+GAK +MIISV  +K RL +LPSA VGDLV+ S KKG P++R++V  AV+VRQR+ +RR +G ++ FEDNA VIVN  G  +GS V GP+A+E A+ WPR+A
Sbjct:    4 KKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPRVA 133          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.017e-31
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G+  R   GLP+GA + CADNTGA+S+ +I V    G+  ++P+A VGD+ +AS KKG PE+R KV  AV++RQ++ +RR +G  + FEDNA V+V   GE++GS + GPVA+E A+ WPRIA+ +  I+
Sbjct:    3 GIAGREIRGLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.557e-31
Identity = 66/131 (50.38%), Postives = 91/131 (69.47%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            KG+G     + R   GL VG+ V  ADN+GAK + II V G KGRL ++P A +GDLV+ + KKG PE+RK+V  AVIVRQ++ +RR +G ++ FEDNA  IV  +G  KGS + GP+AKE A+ WP++A+
Sbjct:    4 KGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQLAN 134          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 67/121 (55.37%), Postives = 87/121 (71.90%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            LPVGA + CADNTGA+ L II+V G KG   +LP+A +GD+V+ S K+G P++RK+V  AVIVRQRK +RR +G  + FEDNA VIV   G  +GS + GPVAKE A+ WPRI S +  I+
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPRIGSIASIIV 133          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 65/130 (50.00%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G+K + T GLPV A + CADNTGAK LMII V+G KGR +++P+ASVGD+V    K+GK +L  K   A++VRQR  +RRK G ++ FEDNA V+VN+ G  +GS   GP+AKE  + WP ++  S  ++
Sbjct:   12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPIAKEAIERWPSLSVISAQVV 141          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.906e-30
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            LP+GA + C DNTGA+ + IISV G KG   +L SA VGD+V+ S KKG  ++R++V  AV+VRQ+K +RR +GL + FEDNA VI+   G +KGS + GP+AKE ADLWP I S +  I+
Sbjct:   12 LPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLWPAIGSAASIIV 132          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL23_ENCCU1.233e-3754.3360S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_THEAC2.037e-3250.0050S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL14_HYPBU2.660e-3250.3650S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_PICTO7.740e-3250.7750S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_AERPE1.320e-3153.0850S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_THEVO5.017e-3148.4650S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_STAMF8.557e-3150.3850S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL14_METKA1.118e-3055.3750S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_KORCO1.118e-3050.0050S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]
RL14_METST1.906e-3052.8950S ribosomal protein L14P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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