CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.252e-30
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 3
Query:  108 RTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            + T  LPVGA + C DNTGA+ + IISV G KG   +L +A VGD+V+ S KKG  ++R++V  AVIVRQ+K +RR +GL + FEDNA VIV+ +G +KGS + GPVAKE AD WP + S +  I+
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWPSVGSAASIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.247e-30
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   72 GKGRGGAVGLK-FR--TTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G+ RG A G++ FR   T  LPVGA V CADN+GAK L II V   K R+++LP+A+VGD V    KKG  ELRK+VH AVI+RQ+   RR  G+ + FEDNA V+   +GEMKG+ + GPVA E ++ WPR+A+ +  ++
Sbjct:    4 GRSRGKAKGVEEFRPYVTRALPVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPVAAEASEKWPRLANLASMVV 144          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METS3 (50S ribosomal protein L14P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            LP+GA + C DNTGA+ + IISV G KG   +L  A VGDLV+AS KKG  ++R++V  AV++RQ+K + R +GL + FEDNA VI+  +G +KGS V GPVAKE AD WP + S + SIL
Sbjct:   12 LPIGATLQCVDNTGAREIQIISVKGFKGVRRRLDVAGVGDLVVASVKKGTADMRREVVNAVVIRQKKEYMRADGLRVKFEDNAAVIITPEGILKGSEVRGPVAKEAADRWPSVGS-AASIL 131          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 3
Query:   69 MGKGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            +G  +G   GL+  TT        V  ADN+GAK  +II +YG KG L ++P A++ DLVM S +KG PE+RK+   AVIVRQR  +RR +G +I FEDNA VIVN  G  KG+ + GP+AKE A+ WP++AS
Sbjct:   11 LGSRKGLTPGLQHYTT--------VTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERWPKVAS 135          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_SULSO (50S ribosomal protein L14P OS=Sulfolobus solfataricus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 3
Query:  135 AVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            +VVN ADN+G K  MII VYG +G L ++P A++ D+VM S KKG PE+RK+   AVIVRQR  +RR +G +I FEDNA VI+N  G  KG+ V GP+A+E A+ WP+IAS
Sbjct:   22 SVVNVADNSGGKEAMIIGVYGYRGVLRRVPFANIADMVMVSIKKGTPEVRKQKFRAVIVRQRMPYRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIAS 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_META3 (50S ribosomal protein L14P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            G   +    LP GA + CADNTGAK L II+V G KG   +LP+  VG LV  S KKG PE+RK+V PA+I+RQ+K +RR +G  + FEDNA VIV  +G  KGS + GPVAKE A+ W  ++
Sbjct:    3 GFGSKVIRSLPNGARLICADNTGAKELEIIAVKGYKGVARRLPAGGVGSLVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRPDGSRVKFEDNAAVIVTPEGSPKGSEIKGPVAKEAAERWAGVS 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            GL       LP GA + CADNTGAK L +I+V    G + +LPSA VG +V  S KKG PE+RK+V PA+I+RQ+K ++R +G  + FEDNA VIV  +G  KGS + GPV+KE A+ WP ++
Sbjct:    3 GLGSTIVRSLPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVS 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            GL       LP GA + CADNTGAK L +I+V    G + +LPSA VG +V  S KKG PE+RK+V PA+I+RQ+K ++R +G  + FEDNA VIV  +G  KGS + GPV+KE A+ WP ++
Sbjct:    3 GLGSTIVRSLPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVS 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            LPVGA   CADNTGAK + II+V   KG   +LP+A VGD+V+ + KKG PE+RK+V PAV++RQRK  RR +G  + F DNA VIV   G  KGS + GPVAKE A+ WP IA
Sbjct:   12 LPVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPVAKEAAERWPGIA 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 59/110 (53.64%), Postives = 83/110 (75.45%), Query Frame = 3
Query:  138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            +VN +DN+GAK  MIISV+G +G L ++P A+VGDLVM S +KG P++RK+   AV++RQR  +RR +G +I F+DNA VIVN  G  KG+ + GPVA+E A+ WP++AS
Sbjct:   23 MVNVSDNSGAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIVNPDGTAKGTEIRGPVAREAAERWPKVAS 132          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_METTH3.252e-3052.3850S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_CENSY4.247e-3050.3550S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_METS31.614e-2953.7250S ribosomal protein L14P OS=Methanobrevibacter s... [more]
RL14_SULTO8.009e-2949.6250S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_SULSO8.009e-2955.8650S ribosomal protein L14P OS=Sulfolobus solfatari... [more]
RL14_META38.009e-2952.0350S ribosomal protein L14P OS=Methanococcus aeolic... [more]
RL14_METVS1.046e-2850.4150S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA1.046e-2850.4150S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METJA1.046e-2857.0250S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_METS51.366e-2853.6450S ribosomal protein L14P OS=Metallosphaera sedul... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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