CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_ARCFU (50S ribosomal protein L14P OS=Archaeoglobus fulgidus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            LP GA + CADNTGA+ L II+V G KG   + P+A VGD+V+ + KKG PE+RK+VH AVIVRQRK +RR +G  + FEDNA VI N +GE +GS + G VA+E A+ + +I + +  I+
Sbjct:   12 LPTGARLVCADNTGARELEIIAVKGYKGVRRRYPAAGVGDIVVVTVKKGTPEIRKQVHYAVIVRQRKEYRRPDGTRVKFEDNAAVITNERGEPRGSEIRGAVAREAAERFSKIGTIASVIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            GL       LP GA + CADNTGAK L +I+V    G + +LP+  VG +V  S KKG PE+RK+V PA+I+RQ+K +RR +G  + FEDNA VIV  +G  KGS + GPV+KE A+ WP ++
Sbjct:    3 GLGSNIVRSLPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVS 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  108 RTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            +   GL VG+ V   DN+GAK  MII V G  GRL ++P A VGD+V+ + KKG PE+R +V  A++VRQRK +RR +G ++ FEDNA VIV+  G  +GS + GPVA+E  + WPRI +
Sbjct:   12 KVVTGLQVGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPVAREAVERWPRIGN 131          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   75 KGRGGAVGLK-FRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            KG G   G+   R T  LPVGA +  ADN+GAK + II V    G   +L SA VGD+V+A+ KKG+P++R +V  AVI+RQRK +RR +G+ + FEDNA VIV  +G  +G+ + GPVA+E A+ W RI S +  I+
Sbjct:    4 KGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METM7 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            GL       LP GA + CADNTGAK L II+V    G + +LP+  VG +V  S KKG PE+RK+V PA+I+RQ+K ++R +G  + FEDNA VIV  +G  KGS + GPV+KE A+ WP ++
Sbjct:    3 GLGSTIVRSLPNGARLVCADNTGAKELEIIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVS 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRKO (50S ribosomal protein L14P OS=Pyrococcus kodakaraensis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 62/138 (44.93%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   75 KGRGGAVGLK-FRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            KG G   G+   R T  LP+GA +  ADN+GAK + II V G KG   +L +A VGD+V+A+ KKG+P++R +V  AV+VRQRK +RR +G+ + FEDNA  IV  +G  +G+ + G +A+E A+ W R+ S +  +L
Sbjct:    4 KGAGATRGISPVRPTRALPIGAYLKVADNSGAKVIQIIGVVGYKGTRRRLAAAGVGDMVVATVKKGRPDMRHQVVRAVVVRQRKEYRRLDGMRVKFEDNAAAIVTPEGVPRGTEIRGAIAREAAERWVRLGSIASIVL 141          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   75 KGRGGAVGLK-FRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            KG G   G+   R T  +PVGA +  ADN+GAK + +I V    G   +L SA VGD+V+A+ KKG+P++R +V  AVI+RQRK +RR +G+ I FEDNA VIV  +G  +G+ + GPVA+E A+ W RI S +  I+
Sbjct:    4 KGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            GL       LP GA + CADNTGAK L +I+V    G + +LP+  VG +V  S KKG PE+RK+V PA+I+RQ+K ++R +G  + FEDNA VIV  +G  KGS + GPV+KE A+ WP ++
Sbjct:    3 GLGSTIVRSLPNGARLVCADNTGAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVS 125          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 63/138 (45.65%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   75 KGRGGAVGLK-FRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            KG G   G+   R T  +P+GA +  ADN+GAK + +I V    G   +L SA VGD+V+A+ KKG+P++R +V  AVI+RQRK +RR +G+ + FEDNA VIV  +G  +G+ + GPVA+E A+ W RI S +  I+
Sbjct:    4 KGAGATRGISPVRPTRAIPIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAEKWVRIGSIASIIV 141          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            GL       LP GA + CADNTGAK L +I+V    G + +LP+  VG +V  S KKG PE+RK+V PA+I+RQ+K ++R +G  + FEDNA VIV  +G  KGS + GPV+KE A+ WP ++
Sbjct:    3 GLGSTIVRSLPNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPVSKEAAERWPGVS 125          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_ARCFU1.366e-2852.0750S ribosomal protein L14P OS=Archaeoglobus fulgid... [more]
RL14_METMP3.975e-2849.5950S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_IGNH43.975e-2850.0050S ribosomal protein L14P OS=Ignicoccus hospitali... [more]
RL14_PYRFU5.192e-2847.8350S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_METM76.780e-2849.5950S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRKO8.855e-2844.9350S ribosomal protein L14P OS=Pyrococcus kodakarae... [more]
RL14_PYRAB8.855e-2847.1050S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_METM68.855e-2848.7850S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_PYRHO1.157e-2745.6550S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_METM51.157e-2748.7850S ribosomal protein L14P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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