CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_MYCA5 (50S ribosomal protein L14 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  144 NCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            N ADN+GAK +MII   G  G + +  S ++GD+V+ + KK  P       +V  AVIVR ++   R+ G +I F+DNA V++   G ++G+ V GPVA+E  D
Sbjct:    9 NVADNSGAKEVMIIKNLG--GSIVR--STNIGDVVVVTVKKAIPHGFVKEGQVLKAVIVRTKRGLMRENGSHIRFDDNAVVLIKEDGTLRGTRVFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METPP (50S ribosomal protein L14 OS=Methylibium petroleiphilum (strain PM1) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ++ ADNTGAKS+M I V G     +K   A +GD++  S K+  P  R K   V+ AV+VR  K  RR++G  + F+ NA V++N K E  G+ + GPV +E
Sbjct:    8 LDVADNTGAKSVMCIKVLGG----SKRRYAGIGDVIKVSIKEAAPRGRVKKGEVYSAVVVRTAKGVRRQDGSLVKFDGNAAVLLNAKLEPIGTRIFGPVTRE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_MAGSA (50S ribosomal protein L14 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ++ ADN+GA+ +  I V G   R      A+VGD+++ S K+  P  R K   VH AVIVR  K  RR +G  I F+ NA V++N +GE  G+ + GPV +E
Sbjct:    8 LDVADNSGARRVQCIKVLGGSHRT----IATVGDVIVVSIKEAIPRGRVKKGDVHRAVIVRTAKEIRRADGSAIRFDTNAAVLINKQGEPIGTRIFGPVTRE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_LACH4 (50S ribosomal protein L14 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ADN+GA+ L++I V G     +K  + ++GD+V+ + K+  P     +  V  AVIVR +   RR++G YI F++NAGVI+N     +G+ + GPVA+E
Sbjct:   11 ADNSGARELLVIRVLGG----SKRKTGNIGDIVVCTVKQATPGGVVKKGDVVKAVIVRTKSGARREDGSYIKFDENAGVIINADKSPRGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_LACAC (50S ribosomal protein L14 OS=Lactobacillus acidophilus GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ADN+GA+ L++I V G     +K  + ++GD+V+ + K+  P     +  V  AVIVR +   RR++G YI F++NAGVI+N     +G+ + GPVA+E
Sbjct:   11 ADNSGARELLVIRVLGG----SKRKTGNIGDIVVCTVKQATPGGVVKKGDVVKAVIVRTKSGARREDGSYIKFDENAGVIINADKSPRGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_GEOTN (50S ribosomal protein L14 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ADN+GA+ +++I V G  GR      A++GD+V+A+ K   P     + +V  AV+VR ++  RR +G YI F++NA VI+ +    +G+ + GPVA+E  D
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRSDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_EXIS2 (50S ribosomal protein L14 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ADN+GA+ ++ I V G  GR     +A++GD+++ + K+  P     + +V  AV+VR ++  RRK+G YI F++NA VI+ +    +G+ + GPVA+E
Sbjct:   11 ADNSGAREVLTIKVLGGSGR----KTANIGDVIVCTVKQATPGGVVKKGEVVRAVVVRTKRGVRRKDGSYIRFDENAAVIIKDDKSPRGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DESAD (50S ribosomal protein L14 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            + V + ++ ADN+GAK +  I V G     +K   ASVGD+++ S K+  P  + K   V  AV+VR +K   R +G YI F++N+ V++NN  +  G+ + GPVA+E
Sbjct:    2 IQVESKLDVADNSGAKKVSCIKVLGG----SKRRYASVGDIIVVSVKEAMPHSKVKKGAVMKAVVVRTKKEIGRPDGSYIKFDNNSAVLLNNSMDPVGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEIGD (50S ribosomal protein L14 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYG--------IKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ++ ADN+GA+ LM I V           KG       A VGD+++AS K   P    K   V  AV+VR     +R +G  I F+ NA VI+NN+GE +G+ V GPVA+E  D
Sbjct:    8 LDVADNSGARELMCIRVLNSGIGGKGLTKGGGGNKRYAHVGDIIVASVKDAAPRGAVKAGDVVKAVVVRTSHAIKRADGSTIRFDKNAAVIINNQGEPRGTRVFGPVARELRD 120          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DECAR (50S ribosomal protein L14 OS=Dechloromonas aromatica (strain RCB) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ++ ADNTGA+S+M I V G   R      A +GD++  S K   P  R K   V+ AV+VR  K  RR +G  + F+ NA V++NNK E  G+ + GPV +E
Sbjct:    8 LDVADNTGARSVMCIKVLGGSRRRY----AGIGDIIKVSIKDAAPRGRVKKGDVYNAVVVRTAKGVRRPDGSLVRFDGNAAVLLNNKLEPIGTRIFGPVTRE 105          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_MYCA52.588e-1140.3850S ribosomal protein L14 OS=Mycoplasma arthritidi... [more]
RL14_METPP2.588e-1141.1850S ribosomal protein L14 OS=Methylibium petroleip... [more]
RL14_MAGSA2.588e-1141.1850S ribosomal protein L14 OS=Magnetospirillum magn... [more]
RL14_LACH42.588e-1139.3950S ribosomal protein L14 OS=Lactobacillus helveti... [more]
RL14_LACAC2.588e-1139.3950S ribosomal protein L14 OS=Lactobacillus acidoph... [more]
RL14_GEOTN2.588e-1138.2450S ribosomal protein L14 OS=Geobacillus thermoden... [more]
RL14_EXIS22.588e-1137.3750S ribosomal protein L14 OS=Exiguobacterium sibir... [more]
RL14_DESAD2.588e-1137.9650S ribosomal protein L14 OS=Desulfovibrio salexig... [more]
RL14_DEIGD2.588e-1139.8250S ribosomal protein L14 OS=Deinococcus geotherma... [more]
RL14_DECAR2.588e-1141.1850S ribosomal protein L14 OS=Dechloromonas aromati... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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