CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CAUSK (50S ribosomal protein L14 OS=Caulobacter sp. (strain K31) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ADN+GA+ +M I V G  GR      ASVGD+++ S K+  P  R K   V  AV+VR  +  +RK+G  I F+ NA VIVN + E  G+ + GPV +E
Sbjct:   11 ADNSGARRVMCIKVLGGAGRRY----ASVGDVIVVSVKEAIPRGRVKKGDVLRAVVVRVNQGMKRKDGSLIRFDKNAAVIVNKQSEPVGTRIFGPVPRE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BIFAA (50S ribosomal protein L14 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ++ ADNTGAK L+ I V G     +K   A +GD+++AS K   P    K   V  AV+VR  K  RR +G YI F++NA VI+ +  E KG+ + GPV +E  D
Sbjct:    8 LHVADNTGAKELLAIRVLGG----SKRRYAGIGDVIVASVKDAIPGGSVKKGDVVKAVVVRTVKEHRRVDGSYIKFDENAAVILGSGREPKGTRIFGPVGRELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BIFA0 (50S ribosomal protein L14 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ++ ADNTGAK L+ I V G     +K   A +GD+++AS K   P    K   V  AV+VR  K  RR +G YI F++NA VI+ +  E KG+ + GPV +E  D
Sbjct:    8 LHVADNTGAKELLAIRVLGG----SKRRYAGIGDVIVASVKDAIPGGSVKKGDVVKAVVVRTVKERRRADGSYIKFDENAAVILGSGREPKGTRIFGPVGRELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BACST (50S ribosomal protein L14 OS=Bacillus stearothermophilus GN=rplN PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ADN+GA+ +++I V G  GR      A++GD+V+A+ K   P     + +V  AV+VR ++  RR +G YI F++NA VI+ +    +G+ + GPVA+E  D
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BACSK (50S ribosomal protein L14 OS=Bacillus clausii (strain KSM-K16) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ADN+GA+ ++ I V G  GR      A++GD+++ S K+  P     +  V  AVIVR +   RR +G YI F++NA VIV +    +G+ + GPVA+E  D
Sbjct:   11 ADNSGAREVLCIKVLGGSGR----KIANIGDVIVCSVKEATPGGVVKKGDVVKAVIVRSKSGVRRNDGSYIKFDENAAVIVRDDKSPRGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_AGRT5 (50S ribosomal protein L14 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ++ ADN+GA+ +M I V G     +K   ASVGD+++ S K+  P  R K   V  AV+VR  K  RR +G  I F++NA V+++NK E  G+ + GPV +E
Sbjct:    8 LDVADNSGARRVMCIKVLGG----SKRKYASVGDIIVVSIKEAIPRGRVKKGDVMKAVVVRTAKDIRRADGSVIRFDNNAAVLIDNKKEPIGTRIFGPVPRE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_VITVI (50S ribosomal protein L14, chloroplastic OS=Vitis vinifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485
            +N ADN+GA+ LM I + G   R      A +GD+++A  K+  P +   R +V  AVIVR  K  +R  G+ I ++DNA VI++ +G  KG+ + G + +E   L + +I S +  +L
Sbjct:    8 LNVADNSGARELMCIRIIGTSNRRY----AHIGDVIVAVIKEVVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIVRELRQLNFTKIVSLAPEVL 122          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_HUPLU (50S ribosomal protein L14, chloroplastic OS=Huperzia lucidula GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485
            +N ADN+GAK  M I +     R      A+ G++++A  K+  P +   + ++  AV+VR  K  +R  G+ I F+DNA VI+N +G  +G+ V GPVA+E  +  + +I S +  +L
Sbjct:    8 LNVADNSGAKKPMCIRILKASNR----KYANTGNVIVAVVKEAVPNMPLRKSEIVRAVVVRTCKELKRNNGMIIQFDDNAAVIINQEGNPRGTRVFGPVARESREFNFTKIVSLAPEVL 122          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_GUIAB (50S ribosomal protein L14, chloroplastic OS=Guizotia abyssinica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            +N ADN+GA+ LM I + G   R      A +GD+++A  K   P +   R +V  AVIVR  K  +R  G+ I ++DNA V+++ +G  KG+ V G +A+E
Sbjct:    8 LNVADNSGARELMCIRIIGASHRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_CUSOB (50S ribosomal protein L14, plastid OS=Cuscuta obtusiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL 449
            +N ADN+GA+++M I + G   R      A +GD+++A  K   P +   + +V  AVIVR RK  +R  G+ + ++DNA VI++ +G  KG+ + G + +E   L
Sbjct:    8 LNVADNSGARTIMCIRIIGSSNRRY----AHIGDIIVAVIKDAVPNMTLEKSEVVRAVIVRTRKELKRDNGIILRYDDNAAVIIDKEGNPKGTRIFGAIPRELRKL 109          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_CAUSK3.381e-1143.4350S ribosomal protein L14 OS=Caulobacter sp. (stra... [more]
RL14_BIFAA3.381e-1141.9050S ribosomal protein L14 OS=Bifidobacterium adole... [more]
RL14_BIFA03.381e-1141.9050S ribosomal protein L14 OS=Bifidobacterium anima... [more]
RL14_BACST3.381e-1138.2450S ribosomal protein L14 OS=Bacillus stearothermo... [more]
RL14_BACSK3.381e-1139.2250S ribosomal protein L14 OS=Bacillus clausii (str... [more]
RL14_AGRT53.381e-1141.1850S ribosomal protein L14 OS=Agrobacterium tumefac... [more]
RK14_VITVI3.381e-1135.2950S ribosomal protein L14, chloroplastic OS=Vitis ... [more]
RK14_HUPLU3.381e-1134.4550S ribosomal protein L14, chloroplastic OS=Huperz... [more]
RK14_GUIAB3.381e-1138.2450S ribosomal protein L14, chloroplastic OS=Guizot... [more]
RK14_CUSOB3.381e-1134.9150S ribosomal protein L14, plastid OS=Cuscuta obtu... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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