CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.577e-27
Identity = 59/130 (45.38%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G K +    +  G  + CADNTGA++L ++SV   +G  N+ P A +GD+V+ S KKG PE+RK++  AVI+RQ+K +RR +GL + FEDNA VI ++ G  KGS + GPVA+E A+ + +IAS++  I+
Sbjct:    3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPVAREVAERFGKIASSAAIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 58/130 (44.62%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G++ +    L  GA + C DNTGA+++ IISV   +G  N++P   +GD+ + S KKG PE+RK++  AVIVRQ+K +RR +G+ + FEDNA VIV++KG  KG+ + GPVA+E A+ +P+I + +  I+
Sbjct:    3 GIRSKIPRALNAGAKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVAREAAERFPKIGTTASMIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.497e-27
Identity = 60/118 (50.85%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  114 TLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            T  L   + V  ADN+GAK  +II +YG +G L ++P A++ DLVM S +KG P++RK+   AVIVRQR  +RR +G +I FEDNA VI+N  G  KG+ V GP+A+E A+ WP+IAS
Sbjct:   15 TPALQHNSSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIAS 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.497e-27
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 3
Query:   99 LKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            +K   T GL  G+++ CADNTGA+ L I SV G +GR N+ P A +GD +  S  KG PE+R++V  AV+VRQRK  RR +G  + FEDNA VI+++ GE +G+ + GP+++E A+ +  IAS +  I+
Sbjct:    4 IKADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.497e-27
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 3
Query:   99 LKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            +K   T GL  G+++ CADNTGA+ L I SV G +GR N+ P A +GD +  S  KG PE+R++V  AV+VRQRK  RR +G  + FEDNA VI+++ GE +G+ + GP+++E A+ +  IAS +  I+
Sbjct:    4 IKADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.497e-27
Identity = 63/141 (44.68%), Postives = 95/141 (67.38%), Query Frame = 3
Query:   81 RGG----AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYG--IKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            RGG     V  +F  T G+ + ++VN ADN+GAK + +I V G   K    ++P  SVGD+V+ S ++GKPE+RK++  A++VRQR+ +RR +G ++ FEDNA VIV  +G++KG+ V GPVA E A  WP++AS +  I+
Sbjct:    4 RGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRWPQVASIATMII 144          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.279e-26
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   99 LKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            LK   T GL  G++V CADNTGA+ L +ISV G  G  N+ P A +GD V  S  KG PE+R++V  AVIVRQRK+ RR +G  + FEDNA VI++   E +G+ + GP+A+E A+ +  IAS +  I+
Sbjct:    4 LKADVTKGLERGSLVTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.849e-26
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 3
Query:   99 LKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            LK   T GL  G+++ CADNTGA+ L +ISV G  G  N+ P A +GD V  S  KG PE+R++V  AV+VRQRK  RR  G  + FEDNA VI+++  E +G+ + GPVA+E A+ +  IAS +  I+
Sbjct:    4 LKADVTQGLSKGSLITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 65/143 (45.45%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   63 KEMGKGRGGAVGLKFR--TTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            K+ GKG       +FR   T  +PVGA + CADN+GAK L +I+V   + R ++LPSASVGD      KKG  ELRK+V+ AVI+RQ+   RR  G+ + FEDNA V++  +GE KG+ + GPVA E ++ WPR+A+ +  ++
Sbjct:    3 KQAGKGVE-----EFRPYVTKVIPVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKWPRVANLASMVV 140          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G++      L  GA + C DNTGAK + IISV   +G  N++P A +GD+ + S KKG PE+RK+V  AV+VRQ++ +RR +GL++ FEDNA VI + +G  KG+ + GPVA+E A+ +P+I + +  I+
Sbjct:    3 GMRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_METTP2.577e-2745.3850S ribosomal protein L14P OS=Methanosaeta thermop... [more]
RL14_METBU3.365e-2744.6250S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_SULAC7.497e-2750.8550S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_HALSA7.497e-2745.7450S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS37.497e-2745.7450S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_CALMQ7.497e-2744.6850S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_HALWD1.279e-2648.0650S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_HALLT2.849e-2647.2950S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_NITMS4.859e-2645.4550S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_METAC4.859e-2644.6250S ribosomal protein L14P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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