CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 57/130 (43.85%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G++      L  GA + C DNTGAK + IISV   +G  N++P A +GD+ + S KKG PE+RK++  AV+VRQ++ +RR +GL++ FEDNA VI +  G  KG+ + GPVA+E A+ +P+I + +  I+
Sbjct:    3 GIRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 58/130 (44.62%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            G++      L  GA V C DNTGAK + IISV   +G  N++P A +GD+ + S KKG PE+RK+V  AV+VRQ++ +RR +GL + FEDNA VI + +G  KG+ + GP+A+E A+ +P+I + +  I+
Sbjct:    3 GIRSNIPRALNAGAKVPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.412e-25
Identity = 59/141 (41.84%), Postives = 93/141 (65.96%), Query Frame = 3
Query:   69 MGKGRGGAVGLKFRTTL--GLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            M K     VG+ +R  L  G+ + ++V  ADN+GA    +I V   K    ++P A+VGD+V+ S + GKPELRK+V  A+++RQR+ +RR +G +I FEDNA VI+  +GE KG+ + GP+AKE A+ WP++++ +  I+
Sbjct:    1 MAKRGPKTVGVSYRLGLTPGVFMESLVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKEAAERWPKLSAMASIIV 141          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 56/124 (45.16%), Postives = 82/124 (66.13%), Query Frame = 3
Query:  114 TLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            T GL  G+++ CADNTGA+ L +ISV+G  G  N+ P A +GD +  S  KG PE+R++V  AV+VRQRK  RR +G  + FEDNA VIV+   + +G+ + GP+A+E A  +  +AS +  I+
Sbjct:    9 TQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  108 RTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            +T   L  G  + CADNTGA+ + I+SV+G  G   + P   +GD+   + KKG P++RKK+  AV++RQ+K  RR  GL + F+DNA V+V+ K E KG+ + GPVA+E A+ +P++ S
Sbjct:    7 KTPRALATGTKLTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGS 126          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.042e-24
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            GL  +    L  G+ + CADNTGA+ + I+SV+G  G  N+ P   +GDL   + KKG P++++K+  AV+VRQ+K +RR  GL + FE+NA +++N  G+ +G+ + GPVA+E A+ +P++ S +  I+
Sbjct:    3 GLTSKIPRALQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 3
Query:   81 RGG----AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYG--IKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            RGG     V  +F  T G+ + ++V  ADN+GAK + +I V G   K    ++P A VGD+V+   ++GKPELRK++  A++VRQR+ +RR +G ++ FEDNA VIV  +G+ KGS + GPVA E    WP IA+
Sbjct:    4 RGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIAN 138          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   81 RGG----AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRL--NKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            RGG     V  +F  T G+ + ++V  ADN+GA+ + +I V G   +    ++P A VGD+V+   ++GKPELRK++  A++VRQR+ +RR +G ++ FEDNA VIV  +G+ KGS + GPVA E    WP IA N  SI+
Sbjct:    4 RGGKRTVGVSYRFHVTPGIFLNSLVPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIA-NLASII 143          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 59/135 (43.70%), Postives = 87/135 (64.44%), Query Frame = 3
Query:   81 RGG----AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRL--NKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            RGG     V  +F  T G+ + ++V  ADN+GAK + +I V G   +    ++P A VGD+V+   ++GKPELRK++  A++VRQR+ +RR +G ++ FEDNA VIV  +G+ KGS + GPVA E    WP IA+
Sbjct:    4 RGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIAN 138          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/124 (43.55%), Postives = 81/124 (65.32%), Query Frame = 3
Query:  114 TLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            T GL  G+++ CADNTGA+ L + S+ G  G  N+ P A +GD +  S  KG PE+R++V  AV++RQRK  RR +G  + FEDNA VIV+   + +G+ + GP+A+E A+ +  IAS +  I+
Sbjct:    9 TQGLEKGSLITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_METMA1.082e-2543.8550S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_METBF1.082e-2544.6250S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_THEPD2.412e-2541.8450S ribosomal protein L14P OS=Thermofilum pendens ... [more]
RL14_HALMA7.017e-2545.1650S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_METB61.197e-2443.3350S ribosomal protein L14P OS=Methanoregula boonei... [more]
RL14_METLZ2.042e-2440.0050S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_PYRCJ2.666e-2444.4450S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_PYRIL3.482e-2443.2650S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_PYRAE3.482e-2443.7050S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]
RL14_NATPD4.548e-2443.5550S ribosomal protein L14P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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