CX301033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23 Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 3 Query: 81 RGG----AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRL--NKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467 RGG V +F T G+ + ++V ADN+GAK + +I V G + ++P A VGD+V+ K+GKPELR+++ ++VRQR+ +RR +G ++ FEDNA VIV +G+ KGS + GPVA E WP IA+ Sbjct: 4 RGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIAN 138
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23 Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 3 Query: 123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNA-GVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464 LPVGA +N ADN+GAK + +I+V G KGR +L A + DLV+ S + GKP++ ++ AV+VR +K WRR++G I FEDNA ++ ++ G KG+ + P+AKE A+ WP +A Sbjct: 12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLA 126
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23 Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 3 Query: 96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467 GL + + G + CADNTGA+ + ++SV+G G + P + D+ S KKG P++R+K+ AV++RQ+K RR GL + FEDNA V+V++K E +G+ + GPVA+E A +PRI S Sbjct: 3 GLGIKVPRAVSTGTKLTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGS 126
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.028e-23 Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 3 Query: 150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485 ADNTGA+ + +ISV +GR N++P A +GD+ + S KKG PE+RK + V++RQ+K +RR GL + FEDNA V+V++ + KG+ + GPVA+E A+ + +I S + I+ Sbjct: 21 ADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21 Identity = 49/121 (40.50%), Postives = 80/121 (66.12%), Query Frame = 3 Query: 123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485 L G+ + C+DNTGA+ + ++SV G + P +GD+ S KKG P++R+K+ AV++RQ+K RR G+ + FEDNA V++N +GE KG+ + G V +E A+ +P+IAS + +I+ Sbjct: 12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADNTGAK +M I+V G +L A VGD+++A+ KK P+ + K V AV+VR K + R +G YI F+DNA VI+N+K E KG+ + GPVA+E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADNTGAK +M I+V G ++ A VGD+++A+ KK P+ + K V AV+VR K + R +G YI F+DNA VI+N+K E KG+ + GPVA+E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADNTGAK +M I+V G ++ A VGD+++A+ KK P+ + K V AV+VR K + R +G YI F+DNA VI+N+K E KG+ + GPVA+E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.732e-15 Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 3 Query: 150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437 ADNTGAK +M I V G +K +VGDL++AS KK +P K V AVIVR +K +RRK+G YI F+DNA V+V +G+ +G+ + GPVA+E Sbjct: 11 ADNTGAKEIMCIRVLGG----SKHRYGTVGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARE 105
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.732e-15 Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 3 Query: 138 VVNCADNTGAKSLMIISVYG-IKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437 ++N ADN+GAK LM+I V G + R K +GD+V+AS K+ P K + AVIVR RK RR +G YI F+DNAGV++NN E + + + GPVA+E Sbjct: 7 ILNVADNSGAKKLMVIRVLGGSRKRFGK-----IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105 The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bpback to top |