CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   81 RGG----AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRL--NKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            RGG     V  +F  T G+ + ++V  ADN+GAK + +I V G   +    ++P A VGD+V+   K+GKPELR+++   ++VRQR+ +RR +G ++ FEDNA VIV  +G+ KGS + GPVA E    WP IA+
Sbjct:    4 RGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIAN 138          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNA-GVIVNNKGEMKGSAVAGPVAKECADLWPRIA 464
            LPVGA +N ADN+GAK + +I+V G KGR  +L  A + DLV+ S + GKP++  ++  AV+VR +K WRR++G  I FEDNA  ++ ++ G  KG+ +  P+AKE A+ WP +A
Sbjct:   12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLA 126          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 3
Query:   96 GLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIAS 467
            GL  +    +  G  + CADNTGA+ + ++SV+G  G   + P   + D+   S KKG P++R+K+  AV++RQ+K  RR  GL + FEDNA V+V++K E +G+ + GPVA+E A  +PRI S
Sbjct:    3 GLGIKVPRAVSTGTKLTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGS 126          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.028e-23
Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            ADNTGA+ + +ISV   +GR N++P A +GD+ + S KKG PE+RK +   V++RQ+K +RR  GL + FEDNA V+V++  + KG+ + GPVA+E A+ + +I S +  I+
Sbjct:   21 ADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 49/121 (40.50%), Postives = 80/121 (66.12%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            L  G+ + C+DNTGA+ + ++SV    G   + P   +GD+   S KKG P++R+K+  AV++RQ+K  RR  G+ + FEDNA V++N +GE KG+ + G V +E A+ +P+IAS + +I+
Sbjct:   12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADNTGAK +M I+V G   +L     A VGD+++A+ KK  P+ + K   V  AV+VR  K + R +G YI F+DNA VI+N+K E KG+ + GPVA+E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADNTGAK +M I+V G   ++     A VGD+++A+ KK  P+ + K   V  AV+VR  K + R +G YI F+DNA VI+N+K E KG+ + GPVA+E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADNTGAK +M I+V G   ++     A VGD+++A+ KK  P+ + K   V  AV+VR  K + R +G YI F+DNA VI+N+K E KG+ + GPVA+E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.732e-15
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ADNTGAK +M I V G     +K    +VGDL++AS KK +P    K   V  AVIVR +K +RRK+G YI F+DNA V+V  +G+ +G+ + GPVA+E
Sbjct:   11 ADNTGAKEIMCIRVLGG----SKHRYGTVGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.732e-15
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  138 VVNCADNTGAKSLMIISVYG-IKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            ++N ADN+GAK LM+I V G  + R  K     +GD+V+AS K+  P    K   +  AVIVR RK  RR +G YI F+DNAGV++NN  E + + + GPVA+E
Sbjct:    7 ILNVADNSGAKKLMVIRVLGGSRKRFGK-----IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL14_PYRAR1.013e-2342.9650S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_NANEQ1.323e-2346.0950S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]
RL14_METHJ1.323e-2341.9450S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL14_UNCMA5.028e-2344.6450S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_METMJ1.239e-2140.5050S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_DEHE19.185e-1746.6750S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_DEHSC1.567e-1645.7150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_DEHSB1.567e-1645.7150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_THERP1.732e-1548.4850S ribosomal protein L14 OS=Thermomicrobium roseu... [more]
RL14_FUSNN1.732e-1546.1550S ribosomal protein L14 OS=Fusobacterium nucleat... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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