CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYG-IKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADNTGA+ +M I V G I+G+     +A++GD+++A  K   P    K   +  AV+VR RK  RR+ G++I FEDNA V++N +G  +G+ + GPVA+E  D
Sbjct:    8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADN+GAK L+ I V G   R       SVGD+++A+ K   P +  K   V  AVIVR RK+ RR+ G+ I F+DNA V++N  G  +G+ V GPVA+E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLGGSNRRY----GSVGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADN+GAK L+ I V G   R       SVGD+++A+ K   P +  K   V  AVIVR RK  RR+ G+ I F+DNA V++N  G  KG+ V GPVA+E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLGGGNRRY----GSVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ADN+GAK +  I V G  GR      A++GD+++ S K   P     +K V  AV+VR +K +RRK+G YI F++NA V++N +GE +G+ + GPVA+E  D
Sbjct:   11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485
            +N ADN+GA+ LM I V G   R      A +GD+V+A  K+  P +   + ++  AVIVR RK  +R  G+ + F+DNA V++N +G  +G+ V GPVA+E  DL + +I S +  +L
Sbjct:    8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_SULMW (50S ribosomal protein L14 OS=Sulcia muelleri (strain GWSS) GN=rplN PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKK---GKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +  ADN+GAK +++I V G K        A +GD ++ S K+   G    + +++ AV+VR +K  RRK+G YI F+DNA V++ N GEMKG+ + GPV++E  D
Sbjct:    8 IRVADNSGAKEVLLIRVLGGK------KYAYIGDTIIVSIKEAIAGSSVKKGQLYKAVVVRTKKKIRRKDGSYIRFDDNACVLLTNTGEMKGTRILGPVSRELRD 106          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADN+GA+ LM I   G   R     SA++GD+++A  K   P +   R  +  AVIVR RK  RR+ G+ I F+DNA VI+N +G  +G+ V GP+A+E  D
Sbjct:    8 LNVADNSGARELMCIRALGGSYR----ESANIGDVIIAVVKDALPNMPVKRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            + V  ++N ADNTGAK LM I V G   R      AS+GD+++ S K+  P+    + +V  AV+VR +K  RR +G YI F++NA VI+ +    +G+ + GPVA+E
Sbjct:    2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_AMOA5 (50S ribosomal protein L14 OS=Amoebophilus asiaticus (strain 5a2) GN=rplN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            +N ADN+GAK +  I V G      K   ASVGD ++ S K   P    K   V  AV+VR +K  RRK+G YI F+DNA V++ N  E++G+ ++GPVA+E
Sbjct:    8 LNVADNSGAKQVQCIRVLGG----TKKRYASVGDRIVVSVKSASPAGNIKKGAVSKAVVVRTKKEVRRKDGSYIRFDDNAAVLLQNNDELRGTRISGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ++  ADNTGAK +M I V G   +      A +GD ++A  K+  P +   R  V  AV+VR +K+ RR++G+YI F+DNA VIVN     +G+ V GPVA+E  D
Sbjct:    7 MLTVADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRD 107          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_STIHE8.597e-1542.4550S ribosomal protein L14, chloroplastic OS=Stigeo... [more]
RL14_THEEB1.123e-1444.7650S ribosomal protein L14 OS=Thermosynechococcus e... [more]
RL14_CYAP41.466e-1445.7150S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_CHLT31.466e-1443.1450S ribosomal protein L14 OS=Chloroherpeton thalas... [more]
RK14_ZYGCR1.466e-1439.5050S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RL14_SULMW1.915e-1440.9550S ribosomal protein L14 OS=Sulcia muelleri (stra... [more]
RK14_CHLRE2.501e-1442.8650S ribosomal protein L14, chloroplastic OS=Chlamy... [more]
RL14_CARHZ4.267e-1440.7450S ribosomal protein L14 OS=Carboxydothermus hydr... [more]
RL14_AMOA54.267e-1444.1250S ribosomal protein L14 OS=Amoebophilus asiaticu... [more]
RK14_PHATR4.267e-1442.4550S ribosomal protein L14, chloroplastic OS=Phaeod... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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