CX301033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15 Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYG-IKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADNTGA+ +M I V G I+G+ +A++GD+++A K P K + AV+VR RK RR+ G++I FEDNA V++N +G +G+ + GPVA+E D Sbjct: 8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADN+GAK L+ I V G R SVGD+++A+ K P + K V AVIVR RK+ RR+ G+ I F+DNA V++N G +G+ V GPVA+E D Sbjct: 8 LNVADNSGAKKLLCIRVLGGSNRRY----GSVGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADN+GAK L+ I V G R SVGD+++A+ K P + K V AVIVR RK RR+ G+ I F+DNA V++N G KG+ V GPVA+E D Sbjct: 8 LNVADNSGAKKLLCIRVLGGGNRRY----GSVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 3 Query: 150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPE---LRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 ADN+GAK + I V G GR A++GD+++ S K P +K V AV+VR +K +RRK+G YI F++NA V++N +GE +G+ + GPVA+E D Sbjct: 11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485 +N ADN+GA+ LM I V G R A +GD+V+A K+ P + + ++ AVIVR RK +R G+ + F+DNA V++N +G +G+ V GPVA+E DL + +I S + +L Sbjct: 8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_SULMW (50S ribosomal protein L14 OS=Sulcia muelleri (strain GWSS) GN=rplN PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.915e-14 Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKK---GKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 + ADN+GAK +++I V G K A +GD ++ S K+ G + +++ AV+VR +K RRK+G YI F+DNA V++ N GEMKG+ + GPV++E D Sbjct: 8 IRVADNSGAKEVLLIRVLGGK------KYAYIGDTIIVSIKEAIAGSSVKKGQLYKAVVVRTKKKIRRKDGSYIRFDDNACVLLTNTGEMKGTRILGPVSRELRD 106
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14 Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADN+GA+ LM I G R SA++GD+++A K P + R + AVIVR RK RR+ G+ I F+DNA VI+N +G +G+ V GP+A+E D Sbjct: 8 LNVADNSGARELMCIRALGGSYR----ESANIGDVIIAVVKDALPNMPVKRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14 Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437 + V ++N ADNTGAK LM I V G R AS+GD+++ S K+ P+ + +V AV+VR +K RR +G YI F++NA VI+ + +G+ + GPVA+E Sbjct: 2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_AMOA5 (50S ribosomal protein L14 OS=Amoebophilus asiaticus (strain 5a2) GN=rplN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14 Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437 +N ADN+GAK + I V G K ASVGD ++ S K P K V AV+VR +K RRK+G YI F+DNA V++ N E++G+ ++GPVA+E Sbjct: 8 LNVADNSGAKQVQCIRVLGG----TKKRYASVGDRIVVSVKSASPAGNIKKGAVSKAVVVRTKKEVRRKDGSYIRFDDNAAVLLQNNDELRGTRISGPVARE 105
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14 Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 3 Query: 138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 ++ ADNTGAK +M I V G + A +GD ++A K+ P + R V AV+VR +K+ RR++G+YI F+DNA VIVN +G+ V GPVA+E D Sbjct: 7 MLTVADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRD 107 The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bpback to top |