CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            +N ADN+GA+ +M I V G   R      A++GD+++A  K   P +   R +V  AV+VR RK  RR  G+ I F+DNA V++N +G  +G+ V GPVA+E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_RUBXD (50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485
            ADN+GA+SL+ I V G     +K  SA +GD+++AS K+  P    K   V  AV+VR +K  RR++G YI F +NAGV++N+ G  +G+ + GPVA+E  +  + RI S +  +L
Sbjct:   11 ADNSGARSLLCIRVLGG----SKRRSAGIGDVIVASVKEATPGGAVKKGDVVRAVVVRTKKETRREDGSYIRFGENAGVLINSDGSPRGTRIFGPVARELREKGYTRIISLAPEVL 122          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_NITSB (50S ribosomal protein L14 OS=Nitratiruptor sp. (strain SB155-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            +N ADN+GAK +M I V G     +K   ASVGD+++AS KK  P  + K   V  AV+VR +K  +R+ G  I F+DNA VI++NK E  G+ + GPVA+E
Sbjct:    8 LNVADNSGAKEIMAIKVLGG----SKRRYASVGDVIVASVKKALPNGKVKKGQVVKAVVVRTKKEIQRENGSLIRFDDNAAVILDNKNEPIGTRIFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            ADNTGAK ++ I V G      K   ASVGD ++ S K+  P    K   V  AV+VR RK  RR +G YI F+DNA V++  +GEM+G+ V GPVA+E  D
Sbjct:   11 ADNTGAKEVLAIRVLGG----TKKRYASVGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485
            ++N ADN+GA+ LM I V G  G       A +GD+++A  K   P++   R +V  AVIVR RK ++  +G+ I ++DNA VI++ KG  KG+ V G VA+E  +L + +I S +  +L
Sbjct:    7 LLNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485
            ++N ADN+GA+ LM I V G  G       A +GD+++A  K   P++   R +V  AVIVR RK ++  +G+ I ++DNA VI++ KG  KG+ V G VA+E  +L + +I S +  +L
Sbjct:    7 LLNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437
            +N ADN+GA+ LM I + G   R      A +GD+++A  K+  P +   + +V  AV+VR  K  +RK G  I F+DNA VI+N +G  KG+ V GPVA+E
Sbjct:    8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446
            + + + +N ADN+GA+ +M I V G     N    A++GD+++   K   P +   +  +  AVIVR +KT RR +G+ I F+DNA VI+N +   +G+ V GP+AKE  D
Sbjct:    2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRD 108          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BACTN (50S ribosomal protein L14 OS=Bacteroides thetaiotaomicron GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            + V + +   DN+GAK  + I V G  GR      ASVGD+++ S K   P    K   V  A+IVR +K  RR +G YI F+DNA V++NN GE++GS + GPVA+E      ++ S +  +L
Sbjct:    2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARELRATNMKVVSLAPEVL 121          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BACFR (50S ribosomal protein L14 OS=Bacteroides fragilis GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            + V + +   DN+GAK  + I V G  GR      ASVGD+++ S K   P    K   V  A+IVR +K  RR +G YI F+DNA V++NN GE++GS + GPVA+E      ++ S +  +L
Sbjct:    2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARELRATNMKVVSLAPEVL 121          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_CHLAT4.267e-1441.9050S ribosomal protein L14, chloroplastic OS=Chloro... [more]
RL14_RUBXD5.572e-1441.3850S ribosomal protein L14 OS=Rubrobacter xylanophi... [more]
RL14_NITSB5.572e-1446.0850S ribosomal protein L14 OS=Nitratiruptor sp. (st... [more]
RL14_GRAFK5.572e-1447.0650S ribosomal protein L14 OS=Gramella forsetii (st... [more]
RK14_SACOF5.572e-1439.1750S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_SACHY5.572e-1439.1750S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_PHYPA5.572e-1442.1650S ribosomal protein L14, chloroplastic OS=Physco... [more]
RK14_GRATL5.572e-1437.8450S ribosomal protein L14, chloroplastic OS=Gracil... [more]
RL14_BACTN7.278e-1439.5250S ribosomal protein L14 OS=Bacteroides thetaiota... [more]
RL14_BACFR7.278e-1439.5250S ribosomal protein L14 OS=Bacteroides fragilis ... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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