CX301033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 +N ADN+GA+ +M I V G R A++GD+++A K P + R +V AV+VR RK RR G+ I F+DNA V++N +G +G+ V GPVA+E D Sbjct: 8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_RUBXD (50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 3 Query: 150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485 ADN+GA+SL+ I V G +K SA +GD+++AS K+ P K V AV+VR +K RR++G YI F +NAGV++N+ G +G+ + GPVA+E + + RI S + +L Sbjct: 11 ADNSGARSLLCIRVLGG----SKRRSAGIGDVIVASVKEATPGGAVKKGDVVRAVVVRTKKETRREDGSYIRFGENAGVLINSDGSPRGTRIFGPVARELREKGYTRIISLAPEVL 122
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_NITSB (50S ribosomal protein L14 OS=Nitratiruptor sp. (strain SB155-2) GN=rplN PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437 +N ADN+GAK +M I V G +K ASVGD+++AS KK P + K V AV+VR +K +R+ G I F+DNA VI++NK E G+ + GPVA+E Sbjct: 8 LNVADNSGAKEIMAIKVLGG----SKRRYASVGDVIVASVKKALPNGKVKKGQVVKAVVVRTKKEIQRENGSLIRFDDNAAVILDNKNEPIGTRIFGPVARE 105
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 150 ADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 ADNTGAK ++ I V G K ASVGD ++ S K+ P K V AV+VR RK RR +G YI F+DNA V++ +GEM+G+ V GPVA+E D Sbjct: 11 ADNTGAKEVLAIRVLGG----TKKRYASVGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_SACOF (50S ribosomal protein L14, chloroplastic OS=Saccharum officinarum GN=rpl14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485 ++N ADN+GA+ LM I V G G A +GD+++A K P++ R +V AVIVR RK ++ +G+ I ++DNA VI++ KG KG+ V G VA+E +L + +I S + +L Sbjct: 7 LLNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 138 VVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADL-WPRIASNSGSIL 485 ++N ADN+GA+ LM I V G G A +GD+++A K P++ R +V AVIVR RK ++ +G+ I ++DNA VI++ KG KG+ V G VA+E +L + +I S + +L Sbjct: 7 LLNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_PHYPA (50S ribosomal protein L14, chloroplastic OS=Physcomitrella patens GN=rpl14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 141 VNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKE 437 +N ADN+GA+ LM I + G R A +GD+++A K+ P + + +V AV+VR K +RK G I F+DNA VI+N +G KG+ V GPVA+E Sbjct: 8 LNVADNSGARKLMCIQILGASNR----KYAHIGDIIIAVVKEAIPNMPLKKSEVVRAVVVRTCKELKRKNGTIIQFDDNAAVIINQEGNPKGTRVFGPVARE 105
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14 Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPEL---RKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECAD 446 + + + +N ADN+GA+ +M I V G N A++GD+++ K P + + + AVIVR +KT RR +G+ I F+DNA VI+N + +G+ V GP+AKE D Sbjct: 2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRD 108
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BACTN (50S ribosomal protein L14 OS=Bacteroides thetaiotaomicron GN=rplN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 3 Query: 123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485 + V + + DN+GAK + I V G GR ASVGD+++ S K P K V A+IVR +K RR +G YI F+DNA V++NN GE++GS + GPVA+E ++ S + +L Sbjct: 2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARELRATNMKVVSLAPEVL 121
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL14_BACFR (50S ribosomal protein L14 OS=Bacteroides fragilis GN=rplN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 3 Query: 123 LPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKK---VHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485 + V + + DN+GAK + I V G GR ASVGD+++ S K P K V A+IVR +K RR +G YI F+DNA V++NN GE++GS + GPVA+E ++ S + +L Sbjct: 2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARELRATNMKVVSLAPEVL 121 The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bpback to top |