CX301031

Overview
NameCX301031
Unique NameCX301031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 2
Query:    2 EFGTRKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKRKGLKEQMTPLSEFEDKL 529
            ++GTR EG L +E +R + F + DVVL  + I+RGGGQ+IPTARRV Y+S LTA PRL+EPVYMVE+ AP  +L  IY +L ++RGHV +++ RPG+PLY ++A +PVI+S GF   LR  T GQA  Q VFDHW ++  DPL+   +            A   +   R+RKGL E ++    F+ ++
Sbjct:  784 QWGTR-EGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.463e-40
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 2
Query:    2 EFGTRKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 529
            ++GTR EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  771 QWGTR-EGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 2
Query:    2 EFGTRKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 529
            ++GTR EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  771 QWGTR-EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 2
Query:    2 EFGTRKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 529
            ++GTR EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  770 QWGTR-EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 2
Query:    2 EFGTRKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 529
            ++GTR EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  771 QWGTR-EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 2
Query:    2 EFGTRKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 529
            ++GTR EG L +E +R + F++ D V+  + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  771 QWGTR-EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 2
Query:   17 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 496
            +EG LA E +RG+   + D ++H D  HRG GQ+ P  R  IYA  LTAKP LLEP+  ++I+AP + LG I +++ +KRG + + +Q+    +  I A +PV E+F  +  LR AT+G+A     F  W  +      P +    LV  IR+RKGLK +
Sbjct:  575 REGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = 2
Query:   23 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 517
            G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  M      P +  A +V  +RK+KGLKE++   ++F
Sbjct:  580 GPLAQEPMRGLKVVLTDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 60/165 (36.36%), Postives = 96/165 (58.18%), Query Frame = 2
Query:   23 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 517
            G LA+E +RG+   + D V+H D  HRG  Q++P  +  I+A+ L+AKP +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  +      P +    LV  +RK+KGLKE++   ++F
Sbjct:  580 GPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = 2
Query:   23 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 517
            G LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P LLEP+  ++I+     +G + SVLN+ RG + +  Q+       ++A LPV+ESF  S  LRAA +G+ F    F  W         P +     V  +RK+KGLKE++   ++F
Sbjct:  580 GPLAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736          
The following BLAST results are available for this feature:
BLAST of CX301031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
SN114_SCHPO7.760e-4246.28114 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.463e-4043.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB1.911e-4043.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.911e-4043.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.911e-4043.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.911e-4043.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_STAMF8.620e-2539.38Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_THENV2.508e-2436.97Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRIL5.587e-2436.36Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_PYRAE9.530e-2436.36Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]

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Properties
Property NameValue
Genbank descriptionC08005A02SK PhyRootSw1 Citrus sinensis cDNA clone C08005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301031 ID=CX301031; Name=CX301031; organism=Citrus sinensis; type=EST; length=741bp
GGAATTCGGCACGAGGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAG
GTATCTGCTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCAC
AGAGGTGGTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTC
CCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAA
TACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAG
AAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTA
CAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCA
CTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTTGAT
CACTGGGACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGCTGC
ACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAATGA
CACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGACATC
AAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCAAAT
GACACCGCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGACAT
CAAGGGTGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTGTTT
CAAGTTTTTCATATCCTCATTGTGTTTAGTAAAGTATATTA
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