CX301030

Overview
NameCX301030
Unique NameCX301030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301030 vs. ExPASy Swiss-Prot
Match: ACON_CANAL (Aconitate hydratase, mitochondrial OS=Candida albicans GN=ACO1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 55/149 (36.91%), Postives = 68/149 (45.64%), Query Frame = 3
Query:   60 TTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 506
            TTDHIS AG      P  KY   RG      N+Y     N E                 NG+      H  TG+   V   A  Y+ AGH+ +V+    +G GSSR+ AA  P  LG  A+I KSF RIH +NL   G++PL FK   D
Sbjct:  591 TTDHISMAG------PWLKY---RGHLENISNNYMIGAINAE-----------------NGKANEVRNHY-TGKYDGVPQTAAAYRDAGHKWVVIGDENFGEGSSREHAALEPRFLGGFAIITKSFARIHETNLKKQGLLPLNFKNPAD 712          
BLAST of CX301030 vs. ExPASy Swiss-Prot
Match: ACON_CAEEL (Probable aconitate hydratase, mitochondrial OS=Caenorhabditis elegans GN=aco-2 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 53/152 (34.87%), Postives = 70/152 (46.05%), Query Frame = 3
Query:   36 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 491
            L+      TTDHIS AG      P  KY                 RG+ + ++   F      +   NGE+  K  +  TGE   V   A +YKA G   + +    YG GSSR+ AA  P  LG +A+I KSF RIH +NL   G++PL F
Sbjct:  579 LIKVTGKCTTDHISAAG------PWLKY-----------------RGHLDNISNNLFLTAINAD---NGEMN-KVKNQVTGEYGAVPATARKYKADGVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTF 703          
The following BLAST results are available for this feature:
BLAST of CX301030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
ACON_CANAL4.402e-1136.91Aconitate hydratase, mitochondrial OS=Candida albi... [more]
ACON_CAEEL9.806e-1134.87Probable aconitate hydratase, mitochondrial OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionC08005A01SK PhyRootSw1 Citrus sinensis cDNA clone C08005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301030 ID=CX301030; Name=CX301030; organism=Citrus sinensis; type=EST; length=580bp
CTCGTGCCGCCTCGTGCCGAATTCGGCACGAGGGCTTGCTCAATTTTGGT
GACAGTATTACTACCGATCACATCTCTCCGGCAGGAAGTATCCACAAGGA
CAGCCCTGCTGCAAAATATCTGCTTGAGCGTGGGGTGGATCGCAAGGACT
TCAATTCTTATGGTAGTCGTAGGGGTAATGATGAAGTGATGGCAAGGGGT
ACCTTTGCCAATATTCGCATTGTTAACAAGCTCTTGAATGGAGAAGTTGG
CCCAAAAACAGTTCATATTCCAACAGGAGAGAAGCTTTATGTTTTTGATG
CAGCAATGAGGTACAAGGCTGCTGGCCATGAGACCATTGTCCTAGCTGGA
GCAGAGTATGGAAGTGGCAGTTCTCGTGATTGGGCTGCTAAGGGTCCAAT
GCTTCTGGGTGTGAAAGCGGTGATTGCCAAGAGCTTTGAGAGAATTCATC
GTAGTAATCTTGTTGGTATGGGCATCATTCCTCTTTGCTTCAAGCCTGGG
GAGGATGCACACACACTGGGGTTAGCTGGTCATGAGCGCTACACAATCAA
CTTACCAAATAAAGTCAGTGAGATAAGGCC
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