CX300939

Overview
NameCX300939
Unique NameCX300939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_EMENI (Alternative oxidase, mitochondrial OS=Emericella nidulans GN=alxA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  236 NFLTGYHPQDPSVRSI--------QW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCL 448
            + +TGY    P    I        +W  R + LESVAGVPG V    RH RSLRR+++D+GWI TLLEEA NERMHLL  L
Sbjct:  124 DLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFL 204          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_AJECA (Alternative oxidase, mitochondrial OS=Ajellomyces capsulata GN=AOX1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 2
Query:   83 EHIGDHTGRQQNHIWTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYHPQDPSVRSIQ-----------W--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            +HI +     ++ ++T +++ E    +   + + +SD V    +  L    +  TGY    P  + ++           W  R I LE+VAGVPG V    RH RSLRR+++D+GWI TLLEEA NERMHLL
Sbjct:   74 DHIVESVTTWKHPVFTEKQMKEIA--IAHREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLL 203          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_ASPNG (Alternative oxidase, mitochondrial OS=Aspergillus niger GN=aox1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  290 RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCL 448
            R I LESVAGVPG V    RH RSLRR+++D+GWI TLLEEA NERMHLL  L
Sbjct:  149 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFL 201          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_PODAN (Alternative oxidase, mitochondrial OS=Podospora anserina GN=AOX1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  284 QW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            QW  R I LES+AGVPG VA   RH  SLRRL++D+GWI TLLEE+ NERMHLL
Sbjct:  156 QWLVRFIFLESIAGVPGMVAGMLRHLESLRRLKRDNGWIETLLEESYNERMHLL 209          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_MAGGR (Alternative oxidase, mitochondrial OS=Magnaporthe grisea GN=AOX1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  284 QW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCL 448
            QW  R I LES+A VPG VA   RH  SLRRL++D+GWI TLLEEA NERMHLL  L
Sbjct:  147 QWLSRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFL 203          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX2_CANAL (Alternative oxidase 2, mitochondrial OS=Candida albicans GN=AOX2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 49/128 (38.28%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  143 DEKMNNLYRHKP-QTFSDKVMNTLMYSLYHTFNFLTGY------HPQDPSVRSIQW---------RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTFNAFFLTR 478
            DE  N    H+  +T  DK+    +  +   F+ +TGY      +P +   +  +W         R I LESVAGVPG VA   RH  SLR L++D  WI TLL+EA NERMHLL  +      + TR
Sbjct:   98 DECENVTVTHRETKTLGDKISFRSIQFMRQCFDLVTGYAVPKTNNPDE--FKGTRWEMTEGKWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWFTR 223          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX1_CANAL (Alternative oxidase 1, mitochondrial OS=Candida albicans GN=AOX1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 45/114 (39.47%), Postives = 56/114 (49.12%), Query Frame = 2
Query:  176 PQTFSDKVMNTLMYSLYHTFNFLTGYHPQDPS----VRSIQW---------RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTFNAFFLTR 478
            P+T  DK+           F+ +TGY   DP      +  +W         R I LES+AGVPG VA   RH  SLR L +D  WI TL +EA NERMHLL  +      + TR
Sbjct:  124 PRTIGDKISCYGTLFFRKCFDLVTGYAVPDPDKPDQYKGTRWEMTEEKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPSWFTR 237          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX1C_ARATH (Alternative oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 44/106 (41.51%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSL-YHTFNFLTGYHPQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            W   + D  ++    H P T  DK+   ++ SL + T  F           R    R I+LE+VA VPG V     HF+SLRR +Q  GWI  LLEEAENERMHL+
Sbjct:  106 WETYKADLTIDLKKHHVPSTLPDKIAYWMVKSLRWPTDLFFQ---------RRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLM 202          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX1_TOBAC (Alternative oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 49/136 (36.03%), Postives = 63/136 (46.32%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSL-YHTFNFLTGYHPQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLST------------------FNAFFLT 475
            W   + D  ++    H P TF DK     + SL Y T  F           R    R ++LE+VA VPG V     H +SLRR +Q  GWI TLL+EAENERMHL+  +                    FNA+F+T
Sbjct:  130 WETYKADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQ---------RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVT 256          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX2_TOBAC (Alternative oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSL-YHTFNFLTGYHPQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            W   + D  ++    H P TF DK     + +L Y T  F           R    R ++LE+VA VPG V     H +SLRR +Q  GWI  LLEEAENERMHL+
Sbjct:   74 WETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQ---------RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 170          
The following BLAST results are available for this feature:
BLAST of CX300939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AOX_EMENI8.693e-1451.85Alternative oxidase, mitochondrial OS=Emericella n... [more]
AOX_AJECA1.135e-1336.36Alternative oxidase, mitochondrial OS=Ajellomyces ... [more]
AOX_ASPNG1.937e-1369.81Alternative oxidase, mitochondrial OS=Aspergillus ... [more]
AOX_PODAN2.529e-1368.52Alternative oxidase, mitochondrial OS=Podospora an... [more]
AOX_MAGGR4.314e-1366.67Alternative oxidase, mitochondrial OS=Magnaporthe ... [more]
AOX2_CANAL9.612e-1338.28Alternative oxidase 2, mitochondrial OS=Candida al... [more]
AOX1_CANAL1.639e-1239.47Alternative oxidase 1, mitochondrial OS=Candida al... [more]
AOX1C_ARATH1.639e-1241.51Alternative oxidase 1c, mitochondrial OS=Arabidops... [more]
AOX1_TOBAC4.770e-1236.03Alternative oxidase 1, mitochondrial OS=Nicotiana ... [more]
AOX2_TOBAC2.367e-1140.57Alternative oxidase 2, mitochondrial OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionC08003H09SK PhyRootSw1 Citrus sinensis cDNA clone C08003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300939 ID=CX300939; Name=CX300939; organism=Citrus sinensis; type=EST; length=553bp
CAATATTCATTTCCGCGCTTCTCCGCGTCCTCATCCTTTGCAAGCAAAAG
GAAGCCCTTTAAACCCCGCAAAATATTACGAGGAACATATTGGAGACCAT
ACAGGTCGTCAACAGAATCATATTTGGACGTTAGAGGAATTAGACGAGAA
AATGAATAACTTGTATCGTCATAAACCACAAACTTTCTCTGATAAAGTTA
TGAATACACTCATGTATTCCCTTTACCATACATTTAATTTCCTCACTGGA
TATCATCCTCAAGATCCTTCTGTGAGATCGATTCAATGGCGATTGATTTT
ATTAGAGTCTGTCGCTGGTGTGCCAGGCTTCGTGGCAGCGGGATTCCGTC
ATTTCCGCTCTTTGCGCCGCTTACAACAAGACCATGGATGGATTGCTACT
CTTTTAGAGGAAGCTGAAAACGAGCGTATGCATTTATTGCTTTGTTTGAG
TACGTTTAATGCTTTCTTCCTCACTCGTTGGTAGTATTGGCTGGTCAATA
TGTGATGACACCTTTCCTATGAGCATTTATTTAGTTCATCCAAAGTCCAT
GCA
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