CX300939

Overview
NameCX300939
Unique NameCX300939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX1_MANIN (Alternative oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYHPQDPSV-RSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            W     D  ++    H P+TF DK         Y T   L    P D    R    R ++LE+VA VPG V     H +SLR+L+Q  GWI  LLEEAENERMHL+
Sbjct:   95 WETYRSDLSIDLKKHHVPRTFMDKFA-------YRTVKILRV--PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLM 191          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX1A_ARATH (Alternative oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSL-YHTFNFLTGYHPQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            W   + D  ++    H P TF D++    + SL + T  F           R    R ++LE+VA VPG V     H +SLRR +Q  GWI  LLEEAENERMHL+
Sbjct:  131 WETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQ---------RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227          
The following BLAST results are available for this feature:
BLAST of CX300939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AOX1_MANIN2.367e-1141.51Alternative oxidase, mitochondrial OS=Mangifera in... [more]
AOX1A_ARATH6.888e-1139.62Alternative oxidase 1a, mitochondrial OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC08003H09SK PhyRootSw1 Citrus sinensis cDNA clone C08003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300939 ID=CX300939; Name=CX300939; organism=Citrus sinensis; type=EST; length=553bp
CAATATTCATTTCCGCGCTTCTCCGCGTCCTCATCCTTTGCAAGCAAAAG
GAAGCCCTTTAAACCCCGCAAAATATTACGAGGAACATATTGGAGACCAT
ACAGGTCGTCAACAGAATCATATTTGGACGTTAGAGGAATTAGACGAGAA
AATGAATAACTTGTATCGTCATAAACCACAAACTTTCTCTGATAAAGTTA
TGAATACACTCATGTATTCCCTTTACCATACATTTAATTTCCTCACTGGA
TATCATCCTCAAGATCCTTCTGTGAGATCGATTCAATGGCGATTGATTTT
ATTAGAGTCTGTCGCTGGTGTGCCAGGCTTCGTGGCAGCGGGATTCCGTC
ATTTCCGCTCTTTGCGCCGCTTACAACAAGACCATGGATGGATTGCTACT
CTTTTAGAGGAAGCTGAAAACGAGCGTATGCATTTATTGCTTTGTTTGAG
TACGTTTAATGCTTTCTTCCTCACTCGTTGGTAGTATTGGCTGGTCAATA
TGTGATGACACCTTTCCTATGAGCATTTATTTAGTTCATCCAAAGTCCAT
GCA
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