CX300901

Overview
NameCX300901
Unique NameCX300901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +K+MRIL++ LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDV
Sbjct:   15 KKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDV 68          
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  437 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            E R LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDV
Sbjct:   17 ECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDV 68          
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 30/53 (56.60%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  434 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            K +++LM+GLD +GKTTILYKL L E+V+TI T+G+NVET+++K+++ T+WD+
Sbjct:   16 KAIKLLMLGLDGSGKTTILYKLMLNEVVSTISTLGYNVETIQHKHLNLTLWDL 68          
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  434 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDV 592
            K+ ++L++GLD+AGK+T+LYKLKL + +TTIPTIGFNVE +E  +N S TVWDV
Sbjct:   12 KQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNFSLTVWDV 65          
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  425 GTRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDV 592
            G + E +++M+GLD+AGKTTILYKLK  ++V T+PT+GFNVE +E   ++S T+WD+
Sbjct:    8 GHKAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDI 64          
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  434 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDV 592
            K+  IL++GLD+AGK+T+LY+LK  E + TIPTIGFNVE V+ + +++ TVWDV
Sbjct:   12 KQAHILLLGLDSAGKSTLLYRLKFAETLATIPTIGFNVEMVQLQSSLTLTVWDV 65          
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  425 GTRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDV 592
            G R E +++M+GLD+AGKTT+LY+LK  ++V T+PT+GFNVE +E   ++S T+WDV
Sbjct:    8 GHRAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDV 64          
The following BLAST results are available for this feature:
BLAST of CX300901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARL17_HUMAN6.302e-1672.22ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARF11_CAEEL4.085e-1575.00ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARFD_DICDI4.993e-1356.60ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARL14_HUMAN6.521e-1362.96ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL11_MOUSE2.098e-1154.39ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARL14_MOUSE6.104e-1157.41ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]
ARL11_BOVIN6.104e-1154.39ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionC08003E04SK PhyRootSw1 Citrus sinensis cDNA clone C08003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300901 ID=CX300901; Name=CX300901; organism=Citrus sinensis; type=EST; length=594bp
GGGTGTTGAAGTTGGAATTCTGCCTCCAGGAAGCACGTGCTCAAACAAGA
AAGCTTCAAAGGATGGGAGAACGAAGGGACAAAGCTATTAAAGAACTCAG
AGATCAATTAGCCGCAAAGCAACAAGACGCACATGTGGGTACCGAAAAAC
AGAATTTCTGGGAGACCTCAGGTTTCAAGATTGTAGTTTCCATGTCAATG
CTGATCTTGGTGGTATTCTCCAAGCGTTGAAGCATTATGTTATATAGTTA
CCCCTGTGAATAAGGAATGTAGTAACTTAAATGTGGAGAGGTTAGAGAAA
AGCTGTAGGGCCATTTTGCTTGTAGAAAATGCTATAGCTGTAGTGCATCT
GTTTTTGTGCTTTTTGACAATGGAGAATATATTTTTCTTAATTCTCTTAA
AAAAAAAAACCTCGTGCCGAATTCGGCACGAGGAAAGAGATGCGAATTCT
AATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCA
AGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAG
ACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGG
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