CX300896

Overview
NameCX300896
Unique NameCX300896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  188 GYAVSGGGRGIERVDISVDGGKNW-VEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 505
            GYA SGGGR + RV+I+++GG+ W V A  + +    Y         W W F+ +   ++D+  + +I  +A D A N QPE +  IWN+ G++N  W RV+  V  ++M
Sbjct:  377 GYAYSGGGRKVTRVEITMNGGEKWRVCALDHPEKPNKY------GKYWCWCFWSLEVEVLDLLGAKEIAVRAWDEAHNTQPEKL--IWNVMGMMNNCWFRVKTNVCKAHM 478          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 44/174 (25.29%), Postives = 85/174 (48.85%), Query Frame = 2
Query:   14 RHEEGFFMQKDYKMFPPSVNWDNIN-----WKSRRPLMDFPVQCVICS-----LEDVNVMKPGKA-KVSGYAVSGGGRGIERVDISVDGGKNW-VEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            +  + ++  KD ++ PP V+ +  N     +K    + +  +  VI +     +  +N     +   + GY+ SGGG+ + RV++++DGG+ W V    + +    Y         W W F+ +   ++D+  + +I  +A D   N QPE +  IWN+ G++N  W RV++ V
Sbjct:  311 QESDSYYHFKDNRVLPPHVDAELANTEAWWYKPEYIINELNINSVITTPCHEEILPINAWTTQRPYTLRGYSYSGGGKKVTRVEVTLDGGETWQVSTLDHPEKPTKY------GKYWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKL--IWNVMGMMNNCWFRVKMNV 476          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 38/114 (33.33%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  182 VSGYAVSGGGRGIERVDISVDGGKNW--------VEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            + GYA SGGGR + RV++++DGG  W         + ++Y K              W W F+ V   ++D+  + +I  +A D A N QPE +  IWN+ G++N  W RV+  V
Sbjct:  360 IRGYAYSGGGRKVTRVEVTLDGGGTWQVCTLDCPEKPNKYGK-------------YWCWCFWSVEVEVLDLLGAREIAVRAWDEALNTQPEKL--IWNVMGMMNNCWFRVKTNV 458          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  182 VSGYAVSGGGRGIERVDISVDGGKNW--VEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            + GYA SGGG+ + RV++++DGG+ W   E    +K        +     W W F+ +   ++D+  + ++  +A D + N QPE +  IWNL G++N  W R++  V
Sbjct:  386 LKGYAYSGGGKKVTRVEVTLDGGETWSVCELDHQEK-------PNKYGKFWCWCFWSLDVEVLDLLSAKEVAVRAWDESLNTQPEKL--IWNLMGMMNNCWFRIKTNV 484          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  188 GYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            GYA SGGG+ + RV++++DGG+ W   +   K      A +     W W F+ +   ++D+  + +I  +A D   N QP+ +  IWNL G++N  W RV+  +
Sbjct:  382 GYAYSGGGKKVTRVEVTMDGGETWNVCTLDHKEKPTRYAKY-----WCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPDKL--IWNLMGMMNNCWFRVKTNM 478          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 37/114 (32.46%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  182 VSGYAVSGGGRGIERVDISVDGGKNW--------VEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            + GYA SGGGR + RV++++DGG+ W         + ++Y K              W W  + V   ++D+  + +I  +A D A N QPE +  IWN+ G++N  W RV+  V
Sbjct:  364 IRGYAYSGGGRKVTRVEVTLDGGETWQVCTLDCPEKPNKYGK-------------YWCWCLWSVEVEVLDLLGAREIAVRAWDEALNTQPEKL--IWNVMGMMNNCWFRVKTNV 462          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 44/178 (24.72%), Postives = 84/178 (47.19%), Query Frame = 2
Query:   14 RHEEGFFMQKDYKMFPPSVNWDNIN-----WKSRRPLMDFPVQCVICS-----LEDVNVMKPGKA-KVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDK-----WAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            +  + ++  KD ++ PP V+ +  N     +K    + +  +  VI +     +  +N     +   + GY+ SGGG+ + RV++++DGG+ W   +           DH          W W F+ +   ++D+  + +I  +A D   N QPE +  IWN+ G++N  W RV++ V
Sbjct:  311 QESDSYYHFKDNRVLPPHVDAELANTEAWWYKPEYIINELNINSVITTPCHEEILPINAWTTQRPYTLRGYSYSGGGKKVTRVEVTLDGGETWQVCT----------LDHPEKPTKYGKYWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKL--IWNVMGMMNNCWFRVKMNV 476          
The following BLAST results are available for this feature:
BLAST of CX300896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NIA_BETVE2.381e-1135.45Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA2_TOBAC2.381e-1125.29Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA1_SOYBN2.381e-1133.33Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA1_BRANA2.381e-1131.48Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_CICIN4.061e-1132.69Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA2_SOYBN5.304e-1132.46Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_TOBAC5.304e-1124.72Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionC08003D11SK PhyRootSw1 Citrus sinensis cDNA clone C08003D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300896 ID=CX300896; Name=CX300896; organism=Citrus sinensis; type=EST; length=633bp
CTCGTGCCGAATTCGGCACGAGGAGGGCTTCTTTATGCAAAAGGACTACA
AAATGTTTCCACCATCTGTGAATTGGGATAACATTAATTGGAAGTCCAGG
AGACCACTAATGGATTTCCCTGTCCAGTGCGTAATTTGCTCACTAGAGGA
CGTGAATGTGATGAAGCCTGGAAAGGCAAAAGTTAGTGGATATGCGGTAT
CAGGAGGTGGCCGTGGAATTGAGAGAGTAGATATATCTGTTGATGGTGGC
AAAAACTGGGTAGAAGCCTCCAGATACCAGAAGACTGGTATTCCATATAT
TGCAGATCACATGAGCAGCGATAAATGGGCATGGGTATTTTTTGAAGTCA
TTATCGATATTCCACATAGCACTCAAATAGTTGCCAAAGCGGTTGACACA
GCTGCAAATGTCCAACCTGAAAGCGTGGAAACCATCTGGAACTTGAGAGG
CGTACTTAACACCTCATGGCACCGGGTTCAGGTTCGAGTTGGACACTCAA
ATATGTAAACTTAAACATAATAGAAGCAAAAATAAAGAAGTTGAATAGTT
TCTTGACAAACTGTAATAAGTAGTTGGCTCTTCGCGATGTGCTGTCCACA
AAAATAATGTGTTTAAGCTTGATCATGATGTTC
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