CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.910e-68
Identity = 122/162 (75.31%), Postives = 140/162 (86.42%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV  EEG  +A +IGA+ Y+ECSA++ DGV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 1.910e-68
Identity = 122/162 (75.31%), Postives = 140/162 (86.42%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV  EEG  +A +IGA+ Y+ECSA++ DGV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.910e-68
Identity = 122/162 (75.31%), Postives = 140/162 (86.42%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV  EEG  +A +IGA+ Y+ECSA++ DGV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.910e-68
Identity = 122/162 (75.31%), Postives = 140/162 (86.42%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV  EEG  +A +IGA+ Y+ECSA++ DGV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.910e-68
Identity = 122/162 (75.31%), Postives = 140/162 (86.42%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV  EEG  +A +IGA+ Y+ECSA++ DGV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.481e-68
Identity = 121/162 (74.69%), Postives = 139/162 (85.80%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV   EG  +A +IGA+ Y+ECSA++ DGV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.112e-67
Identity = 120/162 (74.07%), Postives = 139/162 (85.80%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENY+AD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR+D  T  ELAK KQ+PV  EEG  +A +I A+ YLECSA++ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67
Identity = 120/162 (74.07%), Postives = 138/162 (85.19%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENY+AD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR D  T  ELAK KQ+PV  EEG  +A +I A+ YLECSA++ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67
Identity = 120/162 (74.07%), Postives = 138/162 (85.19%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENY+AD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR D  T  ELAK KQ+PV  EEG  +A +I A+ YLECSA++ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
[Close]
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_HUMAN (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67
Identity = 120/162 (74.07%), Postives = 138/162 (85.19%), Query Frame = 2 
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENY+AD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR D  T  ELAK KQ+PV  EEG  +A +I A+ YLECSA++ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
RHOA_RAT1.910e-6875.31Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_PONAB1.910e-6875.31Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_MOUSE1.910e-6875.31Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]
RHOA_HUMAN1.910e-6875.31Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
RHOA_BOVIN1.910e-6875.31Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RHOA_CANFA9.481e-6874.69Transforming protein RhoA OS=Canis familiaris GN=R... [more]
RHOC_CHICK2.112e-6774.07Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOC_PONAB2.759e-6774.07Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE2.759e-6774.07Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]
RHOC_HUMAN2.759e-6774.07Rho-related GTP-binding protein RhoC OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
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