CX300890
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67 Identity = 120/162 (74.07%), Postives = 138/162 (85.19%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487 VGDGACGKTCLLIVFSK +FPEVYVPTVFENY+AD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW EV HFC +PIILVG K+DLR D T ELAK KQ+PV EEG +A +I A+ YLECSA++ +GV+EVFE Sbjct: 11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67 Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541 VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC +PIILV K+DLR D ELA+ KQ+PV ++G A+A +I AY YLECSA++ +GV+EVFE GC+ Sbjct: 11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67 Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541 VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC +PIILV K+DLR D ELA+ KQ+PV ++G A+A +I AY YLECSA++ +GV+EVFE GC+ Sbjct: 11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_HUMAN (Rho-related GTP-binding protein RhoB OS=Homo sapiens GN=RHOB PE=1 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67 Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541 VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC +PIILV K+DLR D ELA+ KQ+PV ++G A+A +I AY YLECSA++ +GV+EVFE GC+ Sbjct: 11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67 Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541 VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC +PIILV K+DLR D ELA+ KQ+PV ++G A+A +I AY YLECSA++ +GV+EVFE GC+ Sbjct: 11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.199e-62 Identity = 114/162 (70.37%), Postives = 135/162 (83.33%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487 VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW EV HFC +PIILVG K+ D+ T ELAK KQ+PV ++ + ++I A+ YLECSA++ +GV+EVFE Sbjct: 11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNIPIILVGNKKTAGDE-HTRRELAKMKQEPVKPDDAKEMGSRIKAFGYLECSAKTKEGVREVFE 171
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 2.267e-53 Identity = 99/162 (61.11%), Postives = 121/162 (74.69%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487 VGDGACGKT LL VF+ G FP YVPTVFENYV+D VDGK V+LALWDTAGQE+Y+RLRP+SY +H+ILV F++D+PDSLENV KWI E+ C +P ILVG K DLR D IEE+ + Q V ++ VA +IGA KY+ECS+ +GDGV +VFE Sbjct: 14 VGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFE 175
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52 Identity = 99/162 (61.11%), Postives = 119/162 (73.46%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487 VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDGK V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW EV H C PIILVG K DLRDD TIE+L + K P++ +G A+A +IGA KYLECSA + G+K VF+ Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52 Identity = 99/162 (61.11%), Postives = 119/162 (73.46%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487 VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDGK V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW EV H C PIILVG K DLRDD TIE+L + K P++ +G A+A +IGA KYLECSA + G+K VF+ Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52 Identity = 99/162 (61.11%), Postives = 119/162 (73.46%), Query Frame = 2 Query: 2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487 VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDGK V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW EV H C PIILVG K DLRDD TIE+L + K P++ +G A+A +IGA KYLECSA + G+K VF+ Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170 The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bpback to top |