CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_BOVIN (Rho-related GTP-binding protein RhoC OS=Bos taurus GN=RHOC PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.759e-67
Identity = 120/162 (74.07%), Postives = 138/162 (85.19%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENY+AD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+DLR D  T  ELAK KQ+PV  EEG  +A +I A+ YLECSA++ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67
Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541
            VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC  +PIILV  K+DLR D     ELA+ KQ+PV  ++G A+A +I AY YLECSA++ +GV+EVFE               GC+
Sbjct:   11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67
Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541
            VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC  +PIILV  K+DLR D     ELA+ KQ+PV  ++G A+A +I AY YLECSA++ +GV+EVFE               GC+
Sbjct:   11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_HUMAN (Rho-related GTP-binding protein RhoB OS=Homo sapiens GN=RHOB PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67
Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541
            VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC  +PIILV  K+DLR D     ELA+ KQ+PV  ++G A+A +I AY YLECSA++ +GV+EVFE               GC+
Sbjct:   11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.603e-67
Identity = 122/180 (67.78%), Postives = 141/180 (78.33%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFEHXXXXXXXXXXXXXXGCL 541
            VGDGACGKTCLLIVFSK EFPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFSVD+PDSLEN+ EKW+ EV HFC  +PIILV  K+DLR D     ELA+ KQ+PV  ++G A+A +I AY YLECSA++ +GV+EVFE               GC+
Sbjct:   11 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGSQNGCI 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.199e-62
Identity = 114/162 (70.37%), Postives = 135/162 (83.33%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKTCLLIVFSK +FPEVYVPTVFENYVAD+EVDGK VELALWDTAGQEDYDRLRPLSYPD+ VIL+CFS+D+PDSLEN+ EKW  EV HFC  +PIILVG K+   D+  T  ELAK KQ+PV  ++   + ++I A+ YLECSA++ +GV+EVFE
Sbjct:   11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNIPIILVGNKKTAGDE-HTRRELAKMKQEPVKPDDAKEMGSRIKAFGYLECSAKTKEGVREVFE 171          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.267e-53
Identity = 99/162 (61.11%), Postives = 121/162 (74.69%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGACGKT LL VF+ G FP  YVPTVFENYV+D  VDGK V+LALWDTAGQE+Y+RLRP+SY  +H+ILV F++D+PDSLENV  KWI E+   C  +P ILVG K DLR D   IEE+ +  Q  V  ++   VA +IGA KY+ECS+ +GDGV +VFE
Sbjct:   14 VGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFE 175          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52
Identity = 99/162 (61.11%), Postives = 119/162 (73.46%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VDGK V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW  EV H C   PIILVG K DLRDD  TIE+L + K  P++  +G A+A +IGA KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52
Identity = 99/162 (61.11%), Postives = 119/162 (73.46%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VDGK V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW  EV H C   PIILVG K DLRDD  TIE+L + K  P++  +G A+A +IGA KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.584e-52
Identity = 99/162 (61.11%), Postives = 119/162 (73.46%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VDGK V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW  EV H C   PIILVG K DLRDD  TIE+L + K  P++  +G A+A +IGA KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170          
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
RHOC_BOVIN2.759e-6774.07Rho-related GTP-binding protein RhoC OS=Bos taurus... [more]
RHOB_RAT3.603e-6767.78Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]
RHOB_MOUSE3.603e-6767.78Rho-related GTP-binding protein RhoB OS=Mus muscul... [more]
RHOB_HUMAN3.603e-6767.78Rho-related GTP-binding protein RhoB OS=Homo sapie... [more]
RHOB_BOVIN3.603e-6767.78Rho-related GTP-binding protein RhoB OS=Bos taurus... [more]
RHO_DISOM1.199e-6270.37Ras-like GTP-binding protein O-RHO OS=Discopyge om... [more]
RHO2_SCHPO2.267e-5361.11GTP-binding protein rho2 OS=Schizosaccharomyces po... [more]
RAC1_RAT5.584e-5261.11Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE5.584e-5261.11Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]
RAC1_HUMAN5.584e-5261.11Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
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