CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_HUMAN (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.226e-50
Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V + G+   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW+ E+ H C   P +LVG + DLRDD  TIE+LAKNKQKP++ E    +A  + A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.226e-50
Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V + G+   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW+ E+ H C   P +LVG + DLRDD  TIE+LAKNKQKP++ E    +A  + A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.826e-50
Identity = 96/162 (59.26%), Postives = 116/162 (71.60%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VD K V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV+ KW  EV H C   PIILVG K DLRDD  TIE+L + K  P++  +G A+A  I + KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.826e-50
Identity = 94/162 (58.02%), Postives = 116/162 (71.60%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF NY   V + G+   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW+ E+ H C   P +LVG + DLRDD  TIE+LAKNKQKP++ E    +A  + A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_CAEEL (Cell division control protein 42 homolog OS=Caenorhabditis elegans GN=cdc-42 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.594e-49
Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V + G+   L L+DTAGQEDYDRLRPLSYP + V LVCFSV  P S ENV+EKW+ E+ H C   P +LVG + DLRDD   +E+LAKNKQKPVS + G  +A ++ A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHHCSKTPFLLVGTQVDLRDDPGMLEKLAKNKQKPVSTDVGEKLAKELKAVKYVECSALTQKGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOC_EMENI (GTP-binding protein rhoC OS=Emericella nidulans GN=rhoC PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 5.779e-49
Identity = 97/164 (59.15%), Postives = 117/164 (71.34%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADV--EVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDG CGKTCLLI +S+G FPE YVPTVFENY+        GK VELALWDTAGQE+YDRLRPLSYP++ ++ VCF++D P SLENV +KW  EVLHFC   PIILVG K DLR+    IE L      PV+ E+G AVA ++ A  Y+ECS++   GV  VF+
Sbjct:   75 VGDGGCGKTCLLISYSQGYFPEKYVPTVFENYITQTLHRRSGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPASLENVMDKWYPEVLHFCPTTPIILVGLKSDLRNKRTCIELLKTQGLTPVTPEQGQAVAGRMNA-SYVECSSKEMRGVDSVFQ 237          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.779e-49
Identity = 91/160 (56.88%), Postives = 118/160 (73.75%), Query Frame = 2
Query:    5 GDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            GDGACGKT LL VF++G F +VY PTVFENYV D+ +D + VEL+LWDTAGQE++DRLR LSY ++HVI++CFSVDNP SLENV+ KW+ E+L +C G+ ++LV  K DLRDD   ++ L +        EEG  VA +I A +YLECS++   GV EVF
Sbjct:   24 GDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPAVLDRLQRYGTHTDQYEEGLGVARRIRASRYLECSSKHNRGVNEVF 183          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 7.547e-49
Identity = 93/162 (57.41%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VDGK + L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV  KW  EV H    +PIILVG K D+R+D +T + L + K  PVS E+G     +I A+KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLECSALTQKGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 9.857e-49
Identity = 93/162 (57.41%), Postives = 116/162 (71.60%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VD K V L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV   W  +V H C   PIIL+G K DLRDD +TIE+L + K  P++  +G A+A +I + KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 9.857e-49
Identity = 92/162 (56.79%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VDGK + L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV  KW  E+ H    +PIILVG K D+R+D +T + L + K  P+S E+G A   +I A KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLKTVFD 170          
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
CDC42_HUMAN5.226e-5058.02Cell division control protein 42 homolog OS=Homo s... [more]
CDC42_CANFA5.226e-5058.02Cell division control protein 42 homolog OS=Canis ... [more]
RAC2_MOUSE6.826e-5059.26Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
CDC42_MACFA6.826e-5058.02Cell division control protein 42 homolog OS=Macaca... [more]
CDC42_CAEEL2.594e-4958.02Cell division control protein 42 homolog OS=Caenor... [more]
RHOC_EMENI5.779e-4959.15GTP-binding protein rhoC OS=Emericella nidulans GN... [more]
RHO3_SCHCO5.779e-4956.88GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RAC1C_DICDI7.547e-4957.41Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RAC2_CAVPO9.857e-4957.41Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RAC1A_DICDI9.857e-4956.79Rho-related protein rac1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
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