CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.287e-48
Identity = 88/162 (54.32%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDG CGKT LL+VF+ G FPE Y PTVFE Y+ +++V GK V L +WDTAGQ+DYDRLRPL YPD+ V+L+CF V +P+S +N+  +W  EV HFC+ +PII+VGCK DL  D   + +L +N  +PV+   G  +A  +GA  YLECSAR  D V  VF+
Sbjct:   23 VGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLCKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 184          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.287e-48
Identity = 85/162 (52.47%), Postives = 119/162 (73.46%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            +GDGA GKTCLLI ++   FPE Y+PTVF+NYV ++    +++EL LWDTAGQE+YD+LRPLSY +++V L+CFS+ NP S ENV  KW  EV+HFC  +P ILVG K D RDD   +++L +   KP++ E+G  +A +I A KY+ECSA++   +K+VF+
Sbjct:   12 IGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVFD 173          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.681e-48
Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDGA GKTCLLI ++   FP+ Y+PTVF+NY A   VDG+ V L LWDTAGQE+YDRLR LSYP ++V ++CFS+ +P S ENV+ KW  EV H C  +PI+LVG K+DLR    T+  L +  Q P++ ++G A+A +I A +YLECSA   DGVKEVF
Sbjct:    9 VGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVF 169          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.681e-48
Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDGA GKTCLLI ++   FP+ Y+PTVF+NY A   VDG+ V L LWDTAGQE+YDRLR LSYP ++V ++CFS+ +P S ENV+ KW  EV H C  +PI+LVG K+DLR    T+  L +  Q P++ ++G A+A +I A +YLECSA   DGVKEVF
Sbjct:    9 VGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVF 169          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.681e-48
Identity = 90/161 (55.90%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDGA GKTCLLI ++   FP+ Y+PTVF+NY A   VDG+ V L LWDTAGQE+YDRLR LSYP ++V ++CFS+ +P S ENV+ KW  EV H C  +PI+LVG K+DLR    T+  L +  Q P++ ++G A+A +I A +YLECSA   DGVKEVF
Sbjct:    9 VGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVF 169          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.892e-48
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A+V VDGK + L LWDTAGQEDYDRLRPLSYP + V L+CFS+ +P S ENV  KW  E+ H    +PIILVG K D+R+D  T + L + K  PVS E+G +   +I A KYLECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 1.423e-47
Identity = 89/161 (55.28%), Postives = 120/161 (74.53%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDGA GKT LLI+++   FP+ YVPTVF+N+      D K V L LWDTAGQEDYD LRPLSYP + V ++C+SV   DSL+N++ KW+ E+    QG PIILVG K DLR+D KT+ +L ++KQ+PVS++EG A+A +IGA ++ ECSA +G+GV ++F
Sbjct:   14 VGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQFFECSALTGNGVNDIF 174          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.859e-47
Identity = 89/162 (54.94%), Postives = 116/162 (71.60%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V +  +   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW  EV H C G+P ++VG + DLRDD    ++LA+  Q P++ E+G  +A ++GA KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOF_BOVIN (Rho-related GTP-binding protein RhoF OS=Bos taurus GN=RHOF PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.141e-47
Identity = 85/161 (52.80%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDG CGKT LL+V+S+G FPE Y P+VFE Y A V V  K V L L+DTAGQEDYDRLRPLSY ++H++L+C+ V NP S +NV  KW  EV HFC+G+P++L+GCK DLR D + + +L   + +P++  +G +   +I A  YLECSA+  + V++VF
Sbjct:   29 VGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYTQGQSACEQIRAALYLECSAKFRENVEDVF 189          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.409e-47
Identity = 85/161 (52.80%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDG CGKT LL+V+S+G FPE Y P+VFE Y A V V  K V L L+DTAGQEDYDRLRPLSY ++H++L+C+ V NP S +NV  KW  EV HFC+G+P++L+GCK DLR D + + +L   + +P++  +G +   +I A  YLECSA+  + V++VF
Sbjct:   25 VGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYMQGLSACEQIRAALYLECSAKFRENVEDVF 185          
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
RHOD_HUMAN1.287e-4854.32Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]
RACC_DICDI1.287e-4852.47Rho-related protein racC OS=Dictyostelium discoide... [more]
RHOG_MOUSE1.681e-4855.90Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN1.681e-4855.90Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR1.681e-4855.90Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
RAC1B_DICDI4.892e-4856.79Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RACD_DICDI1.423e-4755.28Rho-related protein racD OS=Dictyostelium discoide... [more]
CDC42_SCHPO1.859e-4754.94Cell division control protein 42 homolog OS=Schizo... [more]
RHOF_BOVIN4.141e-4752.80Rho-related GTP-binding protein RhoF OS=Bos taurus... [more]
RHOF_HUMAN5.409e-4752.80Rho-related GTP-binding protein RhoF OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
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