CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 7.064e-47
Identity = 91/182 (50.00%), Postives = 119/182 (65.38%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNK---------------------QKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            +GDGACGKT LL VF++G FPEVY PTVFENY+ D+ VD KH+ L+LWDTAGQE++DRLR LSY D+  I++CFS+D+ DSLENVQ KW+ E+   C+G+ ++LV  K DLR++      +  N                      +  +S EEG A+A KIGA +YLECSA+   GV E F
Sbjct:   22 LGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAKLNKGVNEAF 203          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 9.226e-47
Identity = 88/162 (54.32%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V +  +   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW  EV H C G+P ++VG + DLRDD   IE+L + + +P++ E+G+ +A ++ A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHHHCPGVPCLVVGTQIDLRDDKVIIEKLQRQRLRPITSEQGSRLARELKAVKYVECSALTQRGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RND3_RAT (Rho-related GTP-binding protein RhoE OS=Rattus norvegicus GN=Rnd3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 85/162 (52.47%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSA-RSGDGVKEVF 484
            VGD  CGKT LL VF+K  FPE YVPTVFENY A  E+D + +EL+LWDT+G   YD +RPLSYPDS  +L+CF +  P++L++V +KW  E+  FC    ++LVGCK DLR D  T+ EL+ ++Q PVS ++GA +A +IGA  Y+ECSA +S + V+++F
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RND3_PONAB (Rho-related GTP-binding protein RhoE OS=Pongo abelii GN=RND3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 85/162 (52.47%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSA-RSGDGVKEVF 484
            VGD  CGKT LL VF+K  FPE YVPTVFENY A  E+D + +EL+LWDT+G   YD +RPLSYPDS  +L+CF +  P++L++V +KW  E+  FC    ++LVGCK DLR D  T+ EL+ ++Q PVS ++GA +A +IGA  Y+ECSA +S + V+++F
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RND3_MOUSE (Rho-related GTP-binding protein RhoE OS=Mus musculus GN=Rnd3 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 85/162 (52.47%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSA-RSGDGVKEVF 484
            VGD  CGKT LL VF+K  FPE YVPTVFENY A  E+D + +EL+LWDT+G   YD +RPLSYPDS  +L+CF +  P++L++V +KW  E+  FC    ++LVGCK DLR D  T+ EL+ ++Q PVS ++GA +A +IGA  Y+ECSA +S + V+++F
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RND3_HUMAN (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 85/162 (52.47%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSA-RSGDGVKEVF 484
            VGD  CGKT LL VF+K  FPE YVPTVFENY A  E+D + +EL+LWDT+G   YD +RPLSYPDS  +L+CF +  P++L++V +KW  E+  FC    ++LVGCK DLR D  T+ EL+ ++Q PVS ++GA +A +IGA  Y+ECSA +S + V+++F
Sbjct:   29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 88/162 (54.32%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  YVPTVF+NY A+V VD K V L LWDTAGQEDYDRLRPLSYP + V L+CF++ +  S  NV+ KW  EV H C    IILVG K DLR+D +++E+L +  Q+P++ ++G  +A +I A+ Y+ECSA +  G+K+VF+
Sbjct:    9 VGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDLREDKESLEKLREKHQQPLTFQQGEQMAKEIKAFCYMECSALTQKGLKQVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.574e-46
Identity = 89/162 (54.94%), Postives = 116/162 (71.60%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V +  +   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW  EV H C G+PII+VG + DLR+D   ++ L + K  P++QE+G  +A ++ A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKYVECSALTQRGLKTVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RND3_PIG (Rho-related GTP-binding protein RhoE OS=Sus scrofa GN=RND3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.506e-46
Identity = 84/162 (51.85%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSA-RSGDGVKEVF 484
            VGD  CG+T LL VF+K  FPE YVPTVFENY A  E+D + +EL+LWDT+G   YD +RPLSYPDS  +L+CF +  P++L++V +KW  E+  FC    ++LVGCK DLR D  T+ EL+ ++Q PVS ++GA +A +IGA  Y+ECSA +S + V+++F
Sbjct:   29 VGDSQCGRTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.506e-46
Identity = 87/162 (53.70%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++   FP  Y+PTVF+NY A V VD K + L LWDTAGQEDYDRLRPLSYP + V L+CFSV +P S +NV  KW  EV H C   P +LVG K D+R+D + ++ L + K  P++ E+G A    IGA KY+ECSA +   ++ VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNAFPNEYIPTVFDNYSATVMVDSKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPPSFDNVSSKWQPEVSHHCPKTPCLLVGTKLDMREDKEQLKRLEEKKITPITTEQGEAKCKDIGAVKYIECSALTQKNLRLVFD 170          
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
RHO3_YEAST7.064e-4750.00GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
CDC42_YEAST9.226e-4754.32Cell division control protein 42 OS=Saccharomyces ... [more]
RND3_RAT1.574e-4652.47Rho-related GTP-binding protein RhoE OS=Rattus nor... [more]
RND3_PONAB1.574e-4652.47Rho-related GTP-binding protein RhoE OS=Pongo abel... [more]
RND3_MOUSE1.574e-4652.47Rho-related GTP-binding protein RhoE OS=Mus muscul... [more]
RND3_HUMAN1.574e-4652.47Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
RACB_DICDI1.574e-4654.32Rho-related protein racB OS=Dictyostelium discoide... [more]
CDC42_CANAL1.574e-4654.94Cell division control protein 42 homolog OS=Candid... [more]
RND3_PIG3.506e-4651.85Rho-related GTP-binding protein RhoE OS=Sus scrofa... [more]
RACA_ENTHI3.506e-4653.70Rho-related protein racA OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
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