CX300890

Overview
NameCX300890
Unique NameCX300890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.980e-46
Identity = 88/162 (54.32%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLL+ ++   FPE YVPTVF++Y   V V GK   L L+DTAGQEDYDRLRPLSYP + V L+CFSV NP S +NV+E+W+ E+  +   +P +L+G + DLRDD KT+  L   K+KPV  E+G  +A +IGA  Y+ECSA +  G+K VF+
Sbjct:   15 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 176          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.980e-46
Identity = 88/162 (54.32%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLL+ ++   FPE YVPTVF++Y   V V GK   L L+DTAGQEDYDRLRPLSYP + V L+CFSV NP S +NV+E+W+ E+  +   +P +L+G + DLRDD KT+  L   K+KPV  E+G  +A +IGA  Y+ECSA +  G+K VF+
Sbjct:   15 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 176          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 7.810e-46
Identity = 87/162 (53.70%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLL+ ++   FPE YVPTVF++Y   V V GK   L L+DTAGQEDYDRLRPLSYP + V L+CFSV NP S +NV+E+W+ E+  +   +P +L+G + DLRDD KT+  L   K+KP+  E+G  +A +IGA  Y+ECSA +  G+K VF+
Sbjct:   15 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 176          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.810e-46
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLR-------DDAKTIEELAKNKQKP------VSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            +GDGACGKT LL VF++G FP+VY PTVFENY+ D+ VD +H+ L+LWDTAGQE++DRLR LSY D+H I++CFSVD+ DSLENV+ KW+SE+   C+G+ ++LV  K DLR       + A T   +   K         +  +EG A+A +IGA +YLECSA+   GV E F
Sbjct:   21 LGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGVNEAF 194          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.810e-46
Identity = 87/162 (53.70%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLL+ ++   FP  Y+ TVF+ Y  +V VDG+ + L+LWDTAGQ+DYD+ R LS+P + V LVCF+++NP S ENV+ KW  EV H C   PIILVG K DLR+D  TIE L + + +PVS  +G  +A +I A KYLECSA +  G+K+VF+
Sbjct:    9 VGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPVSHTQGYVMAKEIKAVKYLECSALTQIGLKQVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.332e-45
Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            +GDGA GKT LL VF+KG FP+VY PT+FENY+ D+ VDG  +EL+LWDTAGQE+YD+LR LSY D+HVI++CF+VD+ DSLENV  KW+ EV   C G+ ++LV  K DLR      +E   +  K +  EEG A A KI A +YLECSA+   GV E F
Sbjct:   19 LGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRG----ADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF 175          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.332e-45
Identity = 89/162 (54.94%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTC+LI ++   FP  Y+PTVFENY + + VD   + L LWDTAGQEDYDRLRPLSYP + V LVCFSV  P S ENV+ KW  E+   C  +PIILVG K D+RDD + ++ LA+    P+   +G  +A KIGA KY+ECSA +   +K VFE
Sbjct:    9 VGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKYIECSALTQANLKLVFE 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.740e-45
Identity = 91/162 (56.17%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            +GDGACGKT LL VF+ G+FPE Y PTVFENYV D  VDG  V L LWDTAGQE+Y+RLRP SY  + +IL+ F+VDN +SL N + KW  E L +C   PI+LVG K+DLR +A   +E A ++  P+  E+   VA  IGA KY+ECSA +G+GV +VFE
Sbjct:   13 IGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADEALRYCPDAPIVLVGLKKDLRQEAH-FKENATDEMVPI--EDAKQVARAIGAKKYMECSALTGEGVDDVFE 171          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.740e-45
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVFE 487
            VGDGA GKTCLLI ++  +FP  YVPTVF+NY   V +  +   L L+DTAGQEDYDRLRPLSYP + V LVCFSV +P S ENV+EKW  EV H C G+P ++VG + DLR++   IE+L + + +P++ E+G   A ++ A KY+ECSA +  G+K VF+
Sbjct:    9 VGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRENKMVIEKLQRQRLRPITPEQGEKFARELRAVKYVECSALTQRGLKNVFD 170          
BLAST of CX300890 vs. ExPASy Swiss-Prot
Match: RHOF_MOUSE (Rho-related GTP-binding protein RhoF OS=Mus musculus GN=Rhof PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.876e-45
Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 2
Query:    2 VGDGACGKTCLLIVFSKGEFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILVCFSVDNPDSLENVQEKWISEVLHFCQGLPIILVGCKRDLRDDAKTIEELAKNKQKPVSQEEGAAVAAKIGAYKYLECSARSGDGVKEVF 484
            VGDG CGKT LL+V+ +G FPE Y P+VFE Y A V V  K V L L+DTAGQEDYDRLRPLSY ++H++L+C+ V NP S +NV  KW  EV HFC+G+P +L+GCK DLR D + + +L   + +P++  +G     ++    YLECSA+  + V++VF
Sbjct:   25 VGDGGCGKTSLLMVYCQGSFPEHYAPSVFEKYTASVTVGNKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPTVLIGCKTDLRKDKEQLRKLRAAQLEPITYTQGLNACEQMRGALYLECSAKFRENVEDVF 185          
The following BLAST results are available for this feature:
BLAST of CX300890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
RHOQ_RAT5.980e-4654.32Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE5.980e-4654.32Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RHOQ_HUMAN7.810e-4653.70Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHO3_ASHGO7.810e-4651.72GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RAC2_CAEEL7.810e-4653.70Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RHO3_SCHPO1.332e-4555.90GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RECG_ENTHI1.332e-4554.94Rho-related protein racG OS=Entamoeba histolytica ... [more]
RHO2_YEAST1.740e-4556.17GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
CDC42_ASHGO1.740e-4553.09Cell division control protein 42 OS=Ashbya gossypi... [more]
RHOF_MOUSE3.876e-4550.93Rho-related GTP-binding protein RhoF OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC08003D04SK PhyRootSw1 Citrus sinensis cDNA clone C08003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300890 ID=CX300890; Name=CX300890; organism=Citrus sinensis; type=EST; length=599bp
TGTTGGTGACGGTGCCTGCGGAAAGACCTGTCTCCTCATTGTCTTCTCAA
AGGGAGAGTTCCCAGAGGTCTATGTGCCCACGGTGTTTGAGAACTACGTC
GCTGATGTTGAGGTCGATGGAAAGCACGTCGAGCTGGCCCTTTGGGATAC
TGCTGGTCAGGAGGATTACGACCGTCTGCGCCCTCTGTCATACCCCGATT
CACACGTGATCCTTGTGTGCTTCTCCGTAGACAACCCGGACTCGCTGGAA
AACGTCCAGGAAAAGTGGATTTCTGAGGTTCTCCACTTCTGCCAGGGGCT
TCCCATCATCCTTGTGGGTTGCAAGAGGGATCTGAGAGACGACGCCAAAA
CCATTGAGGAGCTCGCCAAGAACAAGCAGAAGCCCGTTTCCCAAGAGGAA
GGAGCGGCCGTGGCTGCGAAGATCGGCGCCTACAAATACCTCGAGTGCTC
TGCTAGGTCGGGAGATGGAGTGAAGGAGGTGTTCGAGCATGCTACTAGGG
CTGCCCTCCTCACCAAGGCCAAGAAGAAGAAGGGTTGCTTGATCCTCTAA
ACGAAGGGGAGCCGATTCCGATTCTCTTCGCTTTTTTTCTTTTTCTTCT
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