EY702460

Overview
NameEY702460
Unique NameEY702460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAA2 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain JH1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.367e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 21.557 bits (44), Expect = 3.367e-14
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ +L+      RLP V+F             MM+L
Sbjct:  192 APYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAA1 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.367e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 21.557 bits (44), Expect = 3.367e-14
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ +L+      RLP V+F             MM+L
Sbjct:  192 APYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAES (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.375e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 21.1718 bits (43), Expect = 4.375e-14
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ +L+      RLP V+F             MM+L
Sbjct:  192 APYEVLKQIKDNGRLPVVNFAAGGVATPQDAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAEQ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.375e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 21.1718 bits (43), Expect = 4.375e-14
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ +L+      RLP V+F             MM+L
Sbjct:  192 APYEVLKQIKDNGRLPVVNFAAGGVATPQDAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_HAEDU (Pyridoxal biosynthesis lyase pdxS OS=Haemophilus ducreyi GN=pdxS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.375e-14
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  + +PF+CGCR+LGEALRRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLLKSEYTVPFVCGCRDLGEALRRIGEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 23.483 bits (49), Expect = 4.375e-14
Identity = 13/37 (35.14%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP  LL    QL +LP V+F             MM+L
Sbjct:  192 APFELLLQIKQLGKLPVVNFAAGGVATPADAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACHD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus halodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.682e-14
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITVPTN 228
            H+NK +F +PF+CG R+LGEA RRI +GA ++RT GE GTGNI+EAVRH+      I   +N
Sbjct:  115 HLNKRDFTVPFVCGARDLGEAARRIGEGASMIRTKGEPGTGNIVEAVRHMRMMQAQIRKVSN 176

HSP 2 Score: 21.9422 bits (45), Expect = 5.682e-14
Identity = 12/37 (32.43%), Postives = 15/37 (40.54%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ LL    +   LP V+F             MMQL
Sbjct:  191 APYELLLSIKETGELPVVNFAAGGVATPADAALMMQL 227
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_PASMU (Pyridoxal biosynthesis lyase pdxS OS=Pasteurella multocida GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.684e-14
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI--TVPTNH 231
            H+ K  F +PF+CGCR+LGEALRRI +GA ++RT GE GTGNI+EAVRH+      I   V  NH
Sbjct:  116 HLLKCEFTVPFVCGCRDLGEALRRIGEGASMLRTKGEPGTGNIVEAVRHIRKVNAQIRKVVAMNH 180

HSP 2 Score: 21.557 bits (44), Expect = 5.684e-14
Identity = 12/38 (31.58%), Postives = 16/38 (42.11%), Query Frame = 3 
Query:  270 AAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            +AP  LL     L +LP V+F             MM+L
Sbjct:  191 SAPFELLLQIKALGKLPVVNFAAGGVATPADAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STACT (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus carnosus (strain TM300) GN=pdxS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.684e-14
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K ++ +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLLKSDYTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 22.7126 bits (47), Expect = 5.684e-14
Identity = 18/78 (23.08%), Postives = 24/78 (30.77%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACRRSLCXXXXXXXXXXXXXXXXXXXXXXHYSDPEVRGDAA 506
            AP+ +L+      RLP V+F             MMQL                             HY+D E+ G  A
Sbjct:  192 APYEVLKSIKDNGRLPVVNFAAGGVATPQDAALMMQLGADGVFVGSGIFKSEDPEKFAKAIVQATTHYTDYELIGKLA 269
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_TREDE (Pyridoxal biosynthesis lyase pdxS OS=Treponema denticola GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 31/50 (62.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H++K+ F++PF+CG RNLGEALRRI++GA ++RT GEAGTG++I+AV+H+
Sbjct:  105 HVDKNKFKVPFVCGARNLGEALRRIQEGAKMIRTKGEAGTGDVIQAVKHM 154
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAS1 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDTFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165
The following BLAST results are available for this feature:
BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
PDXS_STAA23.367e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA13.367e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAES4.375e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAEQ4.375e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_HAEDU4.375e-1464.00Pyridoxal biosynthesis lyase pdxS OS=Haemophilus d... [more]
PDXS_BACHD5.682e-1454.84Pyridoxal biosynthesis lyase pdxS OS=Bacillus halo... [more]
PDXS_PASMU5.684e-1456.92Pyridoxal biosynthesis lyase pdxS OS=Pasteurella m... [more]
PDXS_STACT5.684e-1464.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_TREDE6.654e-1462.00Pyridoxal biosynthesis lyase pdxS OS=Treponema den... [more]
PDXS_STAS16.654e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC
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