EY702460

Overview
NameEY702460
Unique NameEY702460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BIFAA (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=pdxS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 30/50 (60.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+K+ F +PF+CG +NLGEALRR+ +GA ++RT GE GTG++I+AVRH+
Sbjct:  114 HIDKNRFDVPFVCGAKNLGEALRRVAEGASMIRTKGEPGTGDVIQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_DESHY (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain Y51) GN=pdxS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 30/50 (60.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_DESHD (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pdxS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 30/50 (60.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STRAW (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces avermitilis GN=pdxS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.310e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H +K  F  PF+CG  NLGEALRRI +GA ++R+ GEAGTGN++EAVRH+     +I
Sbjct:  125 HSDKWAFTTPFVCGATNLGEALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEI 181          

HSP 2 Score: 22.3274 bits (46), Expect = 1.310e-12
Identity = 15/78 (19.23%), Postives = 24/78 (30.77%), Query Frame = 3
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACRRSLCXXXXXXXXXXXXXXXXXXXXXXHYSDPEVRGDAA 506
            AP+ +++   +L +LP V F             M QL                              Y DP++  DA+
Sbjct:  201 APYEIVKEVAELGKLPVVLFSAGGVATPADAALMRQLGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADAS 278          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_HALMA (Pyridoxal biosynthesis lyase pdxS OS=Haloarcula marismortui GN=pdxS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.311e-12
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRH 189
            HI+K  F  PF+CG RNL EALRRI +GA ++RT GEAGTG++ +AV H
Sbjct:  123 HIDKREFTAPFVCGARNLAEALRRIDEGAAMIRTKGEAGTGDVNQAVTH 171          

HSP 2 Score: 25.7942 bits (55), Expect = 1.311e-12
Identity = 13/41 (31.71%), Postives = 16/41 (39.02%), Query Frame = 3
Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            + AP  L+  T    RLP V+F             MMQ  C
Sbjct:  197 HGAPRRLVHETADRGRLPVVNFAAGGIATPADAALMMQHGC 237          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STRZT (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=pdxS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H++K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STRZP (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain P1031) GN=pdxS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H++K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STRZJ (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain JJA) GN=pdxS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H++K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STRR6 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pdxS PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H++K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHM 163          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STRPN (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae GN=pdxS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H++K  F++PF+CG ++LGEALRRI +GA ++RT GE GTG+I++AVRH+
Sbjct:  114 HVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHM 163          
The following BLAST results are available for this feature:
BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
PDXS_BIFAA7.357e-1360.00Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_DESHY1.255e-1260.00Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_DESHD1.255e-1260.00Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_STRAW1.310e-1256.14Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_HALMA1.311e-1261.22Pyridoxal biosynthesis lyase pdxS OS=Haloarcula ma... [more]
PDXS_STRZT2.141e-1258.00Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRZP2.141e-1258.00Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRZJ2.141e-1258.00Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRR62.141e-1258.00Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRPN2.141e-1258.00Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC
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