EY702460

Overview
NameEY702460
Unique NameEY702460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_LEIXX (Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyli subsp. xyli GN=pdxS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITVPTNHGR 237
            HI+K +F +PF+CG  NLGEALRRI +GA ++R+ GEAGTG++ EA +H+     +I   T   R
Sbjct:  120 HIDKWDFTVPFVCGATNLGEALRRIIEGAAMIRSKGEAGTGDVSEATKHIRKITAEIKALTAMSR 184          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_HYPBU (Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pdxS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITV 219
            HI K  FR+PF+ G R+L EALRRI +GA ++RT GEAGTGN+ EAVRH+     DI V
Sbjct:  150 HIWKWEFRVPFVNGARSLPEALRRIWEGASMIRTKGEAGTGNVAEAVRHMKAVNRDIAV 208          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_HALSA (Pyridoxal biosynthesis lyase pdxS OS=Halobacterium salinarium GN=pdxS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRH 189
            HI+K  F  PF+CG RNLGEALRRI +GA ++RT GEAGTG++ +AV H
Sbjct:  123 HIDKREFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVNQAVHH 171          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_HALS3 (Pyridoxal biosynthesis lyase pdxS OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRH 189
            HI+K  F  PF+CG RNLGEALRRI +GA ++RT GEAGTG++ +AV H
Sbjct:  123 HIDKREFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVNQAVHH 171          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTU (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K NF +PF+CG  NLGEALRRI +GA ++R+ GEAGTG++  A  H+    G+I
Sbjct:  120 HIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI 176          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pdxS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K NF +PF+CG  NLGEALRRI +GA ++R+ GEAGTG++  A  H+    G+I
Sbjct:  120 HIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI 176          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBT (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pdxS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K NF +PF+CG  NLGEALRRI +GA ++R+ GEAGTG++  A  H+    G+I
Sbjct:  120 HIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI 176          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBP (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K NF +PF+CG  NLGEALRRI +GA ++R+ GEAGTG++  A  H+    G+I
Sbjct:  120 HIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI 176          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBO (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis GN=pdxS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K NF +PF+CG  NLGEALRRI +GA ++R+ GEAGTG++  A  H+    G+I
Sbjct:  120 HIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEI 176          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_PICTO (Pyridoxal biosynthesis lyase pdxS OS=Picrophilus torridus GN=pdxS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HINK  +++P +CG R   EA+RRI +GA ++RT GEAGTGNIIEA+RH+
Sbjct:  124 HINKKIYKVPVVCGARTFPEAVRRIFEGAAMIRTKGEAGTGNIIEAMRHI 173          
The following BLAST results are available for this feature:
BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
PDXS_LEIXX8.134e-1249.23Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyl... [more]
PDXS_HYPBU8.134e-1259.32Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus ... [more]
PDXS_HALSA8.134e-1263.27Pyridoxal biosynthesis lyase pdxS OS=Halobacterium... [more]
PDXS_HALS38.134e-1263.27Pyridoxal biosynthesis lyase pdxS OS=Halobacterium... [more]
PDXS_MYCTU1.062e-1154.39Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCTA1.062e-1154.39Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBT1.062e-1154.39Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBP1.062e-1154.39Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBO1.062e-1154.39Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_PICTO1.812e-1160.00Pyridoxal biosynthesis lyase pdxS OS=Picrophilus t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC
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