EY702460

Overview
NameEY702460
Unique NameEY702460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_DEHE1 (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides ethenogenes (strain 195) GN=pdxS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.924e-17
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H+ KH+F++PF+CGCR+LGEALRRI +GA ++RT GEAGTGNI+EAVRH+   MG +
Sbjct:  114 HVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSV 170          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDX12_ARATH (Probable pyridoxal biosynthesis protein PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.235e-17
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   46 INKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGE-AGTGNIIEAVRHVPPCMGDITVPTN 228
            INKHNFR PF+CGCR+ GEALRRIR+GA ++R  G+   TGNI E V++V   MG++ V  N
Sbjct:  136 INKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVRSLMGEVRVLNN 197          

HSP 2 Score: 31.187 bits (69), Expect = 6.235e-17
Identity = 19/74 (25.68%), Postives = 25/74 (33.78%), Query Frame = 3
Query:  270 AAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACRRSLCXXXXXXXXXXXXXXXXXXXXXXHYSDPEV 491
            +AP+ L+  T Q+ R+P V F             MMQL C                           HY+DP V
Sbjct:  211 SAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMMQLGCDGVFVGSEVFDGPDPFKKLRSIVQAVQHYNDPHV 284          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_CLOBL (Pyridoxal biosynthesis lyase pdxS OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pdxS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.249e-17
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HINK +F++PF+CG RNLGEALRRI +GA ++RT GEAGTGN++EAVRH+
Sbjct:  113 HINKKDFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHM 162          

HSP 2 Score: 25.409 bits (54), Expect = 6.249e-17
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            AP +L++   +  +LP ++F             MMQL C
Sbjct:  189 APFNLIEYVAEKGKLPVINFAAGGIATPADAALMMQLGC 227          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_CLOCE (Pyridoxal biosynthesis lyase pdxS OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pdxS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.121e-17
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+KH F++PF+CG +NLGEALRRI +GA ++RT GEAGTGN++EAVRH+     +I
Sbjct:  113 HIDKHTFKVPFVCGAKNLGEALRRISEGASMIRTKGEAGTGNVVEAVRHMRTVTNEI 169          

HSP 2 Score: 24.2534 bits (51), Expect = 8.121e-17
Identity = 11/41 (26.83%), Postives = 18/41 (43.90%), Query Frame = 3
Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            + AP+ L+    +  +LP ++F             MMQL C
Sbjct:  187 FGAPYDLILYVHENGKLPVINFAAGGIATPADAALMMQLGC 227          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_METTH (Pyridoxal biosynthesis lyase pdxS OS=Methanobacterium thermoautotrophicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.121e-17
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K  F +PF+CG RNLGEALRRI +GA ++RT GE GTGNI+EAVRH+   M +I
Sbjct:  114 HIDKKKFTVPFVCGARNLGEALRRIDEGAAMIRTKGEPGTGNIVEAVRHMRIMMSEI 170          

HSP 2 Score: 28.1054 bits (61), Expect = 8.121e-17
Identity = 19/73 (26.03%), Postives = 24/73 (32.88%), Query Frame = 3
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACRRSLCXXXXXXXXXXXXXXXXXXXXXXHYSDPEV 491
            AP  L++ T +L +LP V+F             MMQL                             HY DPEV
Sbjct:  190 APLELVRETAKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPEGYARAIVEATAHYDDPEV 262          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_PARUW (Pyridoxal biosynthesis lyase pdxS OS=Protochlamydia amoebophila (strain UWE25) GN=pdxS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.085e-16
Identity = 35/50 (70.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+KH F++PF+CGCR+LGEALRRI +GA ++RT GEAGTGN++EAVRH+
Sbjct:  120 HIDKHIFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNVVEAVRHM 169          

HSP 2 Score: 21.9422 bits (45), Expect = 1.085e-16
Identity = 12/40 (30.00%), Postives = 16/40 (40.00%), Query Frame = 3
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACR 392
            AP HL+Q   +   LP  +F             MMQL  +
Sbjct:  196 APFHLVQMVAKSGVLPVPNFAAGGIATPADAALMMQLGAQ 235          

HSP 3 Score: 20.7866 bits (42), Expect = 1.085e-16
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:   14 EVLTPADQE 40
            EVLTPAD+E
Sbjct:  110 EVLTPADEE 118          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.781e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITV 219
            H++K  F +PF+CG R+LGEALRRI +GA ++RT GEAGTGN++EAVRH      +I V
Sbjct:  125 HVDKQPFNVPFVCGARSLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHARQINREIRV 183          

HSP 2 Score: 29.261 bits (64), Expect = 1.781e-16
Identity = 20/77 (25.97%), Postives = 26/77 (33.77%), Query Frame = 3
Query:  276 PHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACRRSLCXXXXXXXXXXXXXXXXXXXXXXHYSDPEVRGDAA 506
            P  LLQ T +L RLP V+F             +MQL                             HY+DP+V  D +
Sbjct:  202 PLDLLQKTAKLGRLPVVNFAAGGLATPADVSLLMQLGVDGVFVGSGIFKSGNPEKRAKAMVQAVTHYNDPKVLADVS 278          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_DICTD (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pdxS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HINKH F++PF+CG R+LGEALRRI +GA ++RT GEAGTGN++EAVRH+   M +I
Sbjct:  116 HINKHAFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEI 172          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDX1_NEUCR (Probable pyridoxine biosynthesis protein pdx-1 OS=Neurospora crassa GN=pdx-1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.315e-16
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F+ PF+CGCRNLGEALRRI++GA ++RT GEAGTG+++EAV+H+
Sbjct:  121 HVQKDQFKAPFVCGCRNLGEALRRIKEGAAMIRTKGEAGTGDVVEAVKHI 170          

HSP 2 Score: 25.409 bits (54), Expect = 2.315e-16
Identity = 12/35 (34.29%), Postives = 16/35 (45.71%), Query Frame = 3
Query:  285 LLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            LL+ T +L RLP V+F             MM+  C
Sbjct:  205 LLKKTAELGRLPVVNFAAGGVATPADAALMMEFGC 239          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDX1_DICDI (Probable pyridoxine biosynthesis protein pdx1 OS=Dictyostelium discoideum GN=pdx1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.316e-16
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRH 189
            HI+K  F++PF+CGCRNLGEALRRI +GA ++RT GEAGTG+++EAVRH
Sbjct:  124 HIDKSEFKVPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRH 172          

HSP 2 Score: 24.2534 bits (51), Expect = 2.316e-16
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3
Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP  L++   +L RLP V+F             MMQL
Sbjct:  193 TYAKEIQAPLELVKEVKRLGRLPVVNFAAGGVATPADAAMMMQL 236          
The following BLAST results are available for this feature:
BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
PDXS_DEHE14.924e-1764.91Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDX12_ARATH6.235e-1758.06Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDXS_CLOBL6.249e-1770.00Pyridoxal biosynthesis lyase pdxS OS=Clostridium b... [more]
PDXS_CLOCE8.121e-1761.40Pyridoxal biosynthesis lyase pdxS OS=Clostridium c... [more]
PDXS_METTH8.121e-1763.16Pyridoxal biosynthesis lyase pdxS OS=Methanobacter... [more]
PDXS_PARUW1.085e-1670.00Pyridoxal biosynthesis lyase pdxS OS=Protochlamydi... [more]
PDX1_SUBDO1.781e-1657.63Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_DICTD1.871e-1664.91Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDX1_NEUCR2.315e-1664.00Probable pyridoxine biosynthesis protein pdx-1 OS=... [more]
PDX1_DICDI2.316e-1669.39Probable pyridoxine biosynthesis protein pdx1 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC
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