EY702460

Overview
NameEY702460
Unique NameEY702460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_DICT6 (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.444e-16
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HINKH F++PF+CG R+LGEALRRI +GA ++RT GEAGTGN++EAVRH+   M +I
Sbjct:  116 HINKHLFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEI 172          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_METKA (Pyridoxal biosynthesis lyase pdxS OS=Methanopyrus kandleri GN=pdxS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.917e-16
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HINK  F +PF+CG RNLGEALRRI +GA ++RT GEAGTGN+ EAVRH+
Sbjct:  114 HINKWEFEVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVAEAVRHM 163          

HSP 2 Score: 25.409 bits (54), Expect = 3.917e-16
Identity = 18/75 (24.00%), Postives = 21/75 (28.00%), Query Frame = 3
Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLACRRSLCXXXXXXXXXXXXXXXXXXXXXXHYSDPEV 491
            Y  P  L+     L RLP V+F             MMQL                             +Y DPEV
Sbjct:  188 YGVPFDLVAEVASLGRLPVVNFAAGGIATPADAALMMQLGADGIFVGSGIFKSDRPQEMAEAIVEATAYYDDPEV 262          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_CLONO (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Clostridium novyi GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.948e-16
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HINK  F +PF+CG RNLGEALRRI +GA ++RT GEAGTGN+IEAVRH+
Sbjct:   57 HINKKEFNVPFVCGARNLGEALRRIGEGACMIRTKGEAGTGNVIEAVRHM 106          

HSP 2 Score: 24.6386 bits (52), Expect = 3.948e-16
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            AP+ L++   +  +LP ++F             MMQL C
Sbjct:  133 APYDLVEYVRENGKLPVINFAAGGIATPADAALMMQLGC 171          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_AERPE (Pyridoxal biosynthesis lyase pdxS OS=Aeropyrum pernix GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.071e-16
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HINK  F++PF+ G R+L EALRRI +GA ++RT GEAGTGN+ EAVRH+   MGDI
Sbjct:  154 HINKWLFKVPFVNGARSLAEALRRIAEGASMIRTKGEAGTGNVAEAVRHMKLIMGDI 210          

HSP 2 Score: 28.1054 bits (61), Expect = 5.071e-16
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  267 YAAPHHLLQPTTQLARLPAVHF 332
            Y  PH L+  T +L RLP V+F
Sbjct:  228 YGVPHQLVDLTARLGRLPVVNF 249          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_THESQ (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga sp. (strain RQ2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HINKH F++PF+CG R+LGEALRRI +GA ++RT GEAGTGN++EAV+H+   M  I
Sbjct:  116 HINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQI 172          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_THEP1 (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pdxS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HINKH F++PF+CG R+LGEALRRI +GA ++RT GEAGTGN++EAV+H+   M  I
Sbjct:  116 HINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRMMEQI 172          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_THEMA (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga maritima GN=pdxS PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HINKH F++PF+CG R+LGEALRRI +GA ++RT GEAGTGN++EAV+H+   M  I
Sbjct:  116 HINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQI 172          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: SNZ3_YEAST (Probable pyridoxine biosynthesis protein SNZ3 OS=Saccharomyces cerevisiae GN=SNZ3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.597e-16
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI KHNF++PF+CG ++LGEALRRI +GA ++RT GEAGTG++ EAV+H+     +I
Sbjct:  112 HIEKHNFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHITKIKAEI 168          

HSP 2 Score: 24.2534 bits (51), Expect = 8.597e-16
Identity = 14/53 (26.42%), Postives = 21/53 (39.62%), Query Frame = 3
Query:  231 RTMTTRSLSQTTYAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            +T +  +   T    P  LL+ T    +LP V+F             +MQL C
Sbjct:  176 KTESDFAAKATELRVPVDLLKTTLSEGKLPVVNFAAGGVATPADAALLMQLGC 228          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: SNZ2_YEAST (Probable pyridoxine biosynthesis protein SNZ2 OS=Saccharomyces cerevisiae GN=SNZ2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.597e-16
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI KHNF++PF+CG ++LGEALRRI +GA ++RT GEAGTG++ EAV+H+     +I
Sbjct:  112 HIEKHNFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHITKIKAEI 168          

HSP 2 Score: 24.2534 bits (51), Expect = 8.597e-16
Identity = 14/53 (26.42%), Postives = 21/53 (39.62%), Query Frame = 3
Query:  231 RTMTTRSLSQTTYAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQLAC 389
            +T +  +   T    P  LL+ T    +LP V+F             +MQL C
Sbjct:  176 KTESDFAAKATELRVPVDLLKTTLSEGKLPVVNFAAGGVATPADAALLMQLGC 228          
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_NATTJ (Pyridoxal biosynthesis lyase pdxS OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.600e-16
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K+ F +PF+CG RNLGEALRR+ +GA ++RT GEAGTGN++EAVRH+   M  I
Sbjct:  116 HIDKNKFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVEAVRHIRTVMDGI 172          

HSP 2 Score: 23.483 bits (49), Expect = 8.600e-16
Identity = 12/37 (32.43%), Postives = 17/37 (45.95%), Query Frame = 3
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ L++   +  RLP V+F             MMQL
Sbjct:  192 APYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQL 228          
The following BLAST results are available for this feature:
BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
PDXS_DICT62.444e-1664.91Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDXS_METKA3.917e-1670.00Pyridoxal biosynthesis lyase pdxS OS=Methanopyrus ... [more]
PDXS_CLONO3.948e-1672.00Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Cl... [more]
PDXS_AERPE5.071e-1663.16Pyridoxal biosynthesis lyase pdxS OS=Aeropyrum per... [more]
PDXS_THESQ7.110e-1663.16Pyridoxal biosynthesis lyase pdxS OS=Thermotoga sp... [more]
PDXS_THEP17.110e-1663.16Pyridoxal biosynthesis lyase pdxS OS=Thermotoga pe... [more]
PDXS_THEMA7.110e-1663.16Pyridoxal biosynthesis lyase pdxS OS=Thermotoga ma... [more]
SNZ3_YEAST8.597e-1657.89Probable pyridoxine biosynthesis protein SNZ3 OS=S... [more]
SNZ2_YEAST8.597e-1657.89Probable pyridoxine biosynthesis protein SNZ2 OS=S... [more]
PDXS_NATTJ8.600e-1661.40Pyridoxal biosynthesis lyase pdxS OS=Natranaerobiu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC
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