EY702460 | Citrus Genome Database

Overview


Name	EY702460
Unique Name	EY702460
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	856

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACCR (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=pdxS PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACC7 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain AH187) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACC4 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain B4264) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACC3 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain 03BB102) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACC2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain G9842) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACC1 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ATCC 10987) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACC0 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain AH820) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACAN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACAC (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACAA (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain A0248) GN=pdxS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.385e-15
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR++GEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 24.6386 bits (52), Expect = 5.385e-15
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 3

Query:  264 TYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            TYA    AP+ +L    +L RLP V+F             MMQL
Sbjct:  185 TYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQL 228

The following BLAST results are available for this feature:

BLAST of EY702460 vs. ExPASy Swiss-Prot

BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201


Match Name	E-value	Identity	Description
PDXS_BACCR	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACC7	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACC4	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACC3	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACC2	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACC1	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACC0	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere...	[more]
PDXS_BACAN	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth...	[more]
PDXS_BACAC	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth...	[more]
PDXS_BACAA	5.385e-15	62.00	Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC