EY702460 | Citrus Genome Database

Overview


Name	EY702460
Unique Name	EY702460
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	856

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_FRAP2 (Pyridoxal biosynthesis lyase pdxS OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI K NF++PF+CGC NLGEALRRI +GA ++RT GEAGTGNI+EAVR +     DI
Sbjct:  112 HIAKDNFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDI 168

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_CLOAB (Pyridoxal biosynthesis lyase pdxS OS=Clostridium acetobutylicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            HI+K  F++PF+CG RNLGEALRRI +GA ++RT GEAGTGN++EAV+H+   M +I
Sbjct:  114 HIDKKAFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVKHMRTVMDEI 170

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_LISW6 (Pyridoxal biosynthesis lyase pdxS OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.997e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H+ K +F +PF+CGCR++GEALRRI +GA ++RT GE GTGNI+EAVRH+    G I
Sbjct:  116 HLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQI 172

HSP 2 Score: 23.8682 bits (50), Expect = 6.997e-15
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3

Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            + AP+ L++    L +LP V+F             MM+L
Sbjct:  190 FGAPYELVKEIKSLGKLPVVNFAAGGVATPSDAALMMEL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_LISMO (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.997e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H+ K +F +PF+CGCR++GEALRRI +GA ++RT GE GTGNI+EAVRH+    G I
Sbjct:  116 HLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQI 172

HSP 2 Score: 23.8682 bits (50), Expect = 6.997e-15
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3

Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            + AP+ L++    L +LP V+F             MM+L
Sbjct:  190 FGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMEL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_LISMH (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.997e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H+ K +F +PF+CGCR++GEALRRI +GA ++RT GE GTGNI+EAVRH+    G I
Sbjct:  116 HLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQI 172

HSP 2 Score: 23.8682 bits (50), Expect = 6.997e-15
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3

Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            + AP+ L++    L +LP V+F             MM+L
Sbjct:  190 FGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMEL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_LISMF (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.997e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H+ K +F +PF+CGCR++GEALRRI +GA ++RT GE GTGNI+EAVRH+    G I
Sbjct:  116 HLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQI 172

HSP 2 Score: 23.8682 bits (50), Expect = 6.997e-15
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3

Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            + AP+ L++    L +LP V+F             MM+L
Sbjct:  190 FGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMEL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_LISMC (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.997e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDI 213
            H+ K +F +PF+CGCR++GEALRRI +GA ++RT GE GTGNI+EAVRH+    G I
Sbjct:  116 HLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQI 172

HSP 2 Score: 23.8682 bits (50), Expect = 6.997e-15
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3

Query:  267 YAAPHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            + AP+ L++    L +LP V+F             MM+L
Sbjct:  190 FGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMEL 228

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_FRATW (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITVPTN 228
            HI+K +F++PF+CGC NLGEALRRI +GA ++RT GEAGTGNI+EAVR +     DI    N
Sbjct:  112 HIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKN 173

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_FRATU (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Francisella tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITVPTN 228
            HI+K +F++PF+CGC NLGEALRRI +GA ++RT GEAGTGNI+EAVR +     DI    N
Sbjct:  112 HIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKN 173

BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_FRATT (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1

Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHVPPCMGDITVPTN 228
            HI+K +F++PF+CGC NLGEALRRI +GA ++RT GEAGTGNI+EAVR +     DI    N
Sbjct:  112 HIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKN 173

The following BLAST results are available for this feature:

BLAST of EY702460 vs. ExPASy Swiss-Prot

BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201


Match Name	E-value	Identity	Description
PDXS_FRAP2	6.019e-15	64.91	Pyridoxal biosynthesis lyase pdxS OS=Francisella p...	[more]
PDXS_CLOAB	6.019e-15	61.40	Pyridoxal biosynthesis lyase pdxS OS=Clostridium a...	[more]
PDXS_LISW6	6.997e-15	59.65	Pyridoxal biosynthesis lyase pdxS OS=Listeria wels...	[more]
PDXS_LISMO	6.997e-15	59.65	Pyridoxal biosynthesis lyase pdxS OS=Listeria mono...	[more]
PDXS_LISMH	6.997e-15	59.65	Pyridoxal biosynthesis lyase pdxS OS=Listeria mono...	[more]
PDXS_LISMF	6.997e-15	59.65	Pyridoxal biosynthesis lyase pdxS OS=Listeria mono...	[more]
PDXS_LISMC	6.997e-15	59.65	Pyridoxal biosynthesis lyase pdxS OS=Listeria mono...	[more]
PDXS_FRATW	7.861e-15	59.68	Pyridoxal biosynthesis lyase pdxS OS=Francisella t...	[more]
PDXS_FRATU	7.861e-15	59.68	Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Fr...	[more]
PDXS_FRATT	7.861e-15	59.68	Pyridoxal biosynthesis lyase pdxS OS=Francisella t...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC