EY702460

Overview
NameEY702460
Unique NameEY702460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_THEGJ (Pyridoxal biosynthesis lyase pdxS OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+K  F+IPF+CG RNLGEA+RRI +GA ++RT GEAGTGNIIEAVRHV
Sbjct:  121 HIDKREFKIPFVCGNRNLGEAVRRIWEGAAMMRTKGEAGTGNIIEAVRHV 170
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_PYRKO (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus kodakaraensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+K  F +PF+CG RNLGEA+RRI +GA ++RT GEAGTGNI+EAVRHV
Sbjct:  121 HIDKREFTVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHV 170
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_THEON (Pyridoxal biosynthesis lyase pdxS OS=Thermococcus onnurineus (strain NA1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI+K  F +PF+CG RNLGEA+RRI +G+ ++RT GEAGTGNI+EAVRHV
Sbjct:  121 HIDKREFNVPFVCGARNLGEAVRRIWEGSAMIRTKGEAGTGNIVEAVRHV 170
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAHJ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.592e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 21.9422 bits (45), Expect = 2.592e-14
Identity = 18/68 (26.47%), Postives = 25/68 (36.76%), Query Frame = 3 
Query:  192 AALHGGYYGSDEPRTMTTRSLSQTTYA----APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            A  H     S+  R +        TYA    AP+ +L+      RLP V+F             MM+L
Sbjct:  161 AVRHMRKVNSEVSRLVVMNDDEIMTYAKELGAPYEVLKQIKDHGRLPVVNFAAGGVATPQDAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_PYRFU (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus furiosus GN=pdxS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            HI K  F +PF+CG RNLGEA+RRI +GA ++RT GEAGTGNIIEAVRHV
Sbjct:  121 HIYKKKFTVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHV 170
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_OCEIH (Pyridoxal biosynthesis lyase pdxS OS=Oceanobacillus iheyensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.367e-14
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK ++ +PF+CGCR+LGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLNKSDYTVPFVCGCRDLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHI 165

HSP 2 Score: 21.1718 bits (43), Expect = 3.367e-14
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ +L    +  RLP V+F             MM+L
Sbjct:  192 APYEILLQIKENGRLPVVNFAAGGVATPADAALMMEL 228
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACSU (Pyridoxal biosynthesis lyase pdxS OS=Bacillus subtilis GN=pdxS PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.367e-14
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK+ + +PF+CGCR+LGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  115 HLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHM 164

HSP 2 Score: 21.1718 bits (43), Expect = 3.367e-14
Identity = 12/37 (32.43%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ LL    +  +LP V+F             MMQL
Sbjct:  191 APYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQL 227
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACP2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus pumilus (strain SAFR-032) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.367e-14
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK+ + +PF+CGCR+LGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  115 HLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHM 164

HSP 2 Score: 21.1718 bits (43), Expect = 3.367e-14
Identity = 12/37 (32.43%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ LL    +  +LP V+F             MMQL
Sbjct:  191 APYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQL 227
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_BACA2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyloliquefaciens (strain FZB42) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.367e-14
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+NK+ + +PF+CGCR+LGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  115 HLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHM 164

HSP 2 Score: 21.1718 bits (43), Expect = 3.367e-14
Identity = 12/37 (32.43%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ LL    +  +LP V+F             MMQL
Sbjct:  191 APYELLLQIKRDGKLPVVNFAAGGVATPADAALMMQL 227
[Close]
BLAST of EY702460 vs. ExPASy Swiss-Prot
Match: PDXS_STAAW (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MW2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.367e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   43 HINKHNFRIPFLCGCRNLGEALRRIRQGAGVVRTHGEAGTGNIIEAVRHV 192
            H+ K  F +PF+CGCRNLGEA RRI +GA ++RT GE GTGNI+EAVRH+
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHM 165

HSP 2 Score: 21.557 bits (44), Expect = 3.367e-14
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 3 
Query:  273 APHHLLQPTTQLARLPAVHFRXXXXXXXXXXXXMMQL 383
            AP+ +L+      RLP V+F             MM+L
Sbjct:  192 APYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMEL 228
The following BLAST results are available for this feature:
BLAST of EY702460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
PDXS_THEGJ1.341e-1474.00Pyridoxal biosynthesis lyase pdxS OS=Thermococcus ... [more]
PDXS_PYRKO1.341e-1470.00Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus ko... [more]
PDXS_THEON2.287e-1468.00Pyridoxal biosynthesis lyase pdxS OS=Thermococcus ... [more]
PDXS_STAHJ2.592e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_PYRFU2.987e-1472.00Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus fu... [more]
PDXS_OCEIH3.367e-1464.00Pyridoxal biosynthesis lyase pdxS OS=Oceanobacillu... [more]
PDXS_BACSU3.367e-1464.00Pyridoxal biosynthesis lyase pdxS OS=Bacillus subt... [more]
PDXS_BACP23.367e-1464.00Pyridoxal biosynthesis lyase pdxS OS=Bacillus pumi... [more]
PDXS_BACA23.367e-1464.00Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyl... [more]
PDXS_STAAW3.367e-1466.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702460 ID=EY702460; Name=EY702460; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCGAAGTCTTGACTCCCGCCGACCAAGAGATCACATCAA
CAAGCACAACTTTCGTATCCCCTTCCTATGCGGCTGCCGGAACTTGGGGG
AAGCTTTGAGGAGGATTCGCCAAGGCGCGGGGGTGGTAAGAACGCACGGC
GAGGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCCGCCCTG
CATGGGGGATATTACGGTTCCGACGAACCACGGACGATGACCACGCGCTC
CCTTTCCCAAACAACATACGCGGCGCCCCACCACTTGCTGCAGCCCACCA
CGCAGCTGGCGCGGTTGCCCGCGGTGCACTTCCGAGCGGGAGGAGCGGGG
ACCCCGGCGGATCCAGCGACGATGATGCAACTTGCATGCCGACGGAGTCT
CTGCCCGCCCGGGCGCCCTCAAGAGCCGCGACCCCCCCAAGCGCCCCCAC
CCCCTCCGACCCCCGGCGCCCACTACAGTGACCCGGAGGTGCGGGGGGAC
GCGGCCTGCCGCGCCGCGCCAGGCCCCCGCCGGTCCCACTTTGAGCGACC
ACAAGGGGTTACGGTCGCCTAGCCCCCCCCATACCCGACCCACACCACCG
CCCCCGCCCCGCCATCCATGCACCACCCCATCTCTACCGCCCGCCCTCCG
GGCGGCGGACCCCCTCCCAACTTCACAAAGCCTCCTCGTTGCCCCTCCCC
GCCCCCCCCCCCCTCTCCAGCAACATACCTCACCCCCTCCCCCACGCGTC
GCGCTCCCCGCGATCCCCCCGGCTGCACCTCACTACTCCGCCTCCCCCCC
CCGCCCCCCCCCCCGCCTCCCCCCGACCACCCCCCCCGCCGCCCTTCCCC
CCCCCC
back to top