CX300853

Overview
NameCX300853
Unique NameCX300853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.585e-30
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            RPFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  ++++S    WIYE
Sbjct:   58 RPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.070e-30
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 302
            RPF+  L+EY+ SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:   59 RPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    9 EFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 302
            +  T+PFF  LI+Y+ SGP+ AM+WEG+  VKTGRTI+GATNP  SAPGTIRGD A+  GRN+ HGSDSVE+A+KEIALWF    +N W      WI+E
Sbjct:   54 DLNTKPFFAGLIKYMNSGPICAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFALDMGRNVCHGSDSVENAKKEIALWFKPEELNQWNHHSAAWIFE 152          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            +PFF  L+ Y+ SGP+VAM+WEG+ VVKTGRTI+GATNP  SAPGTIRGD AI  GRN+ HGSDSVESA+KEI LWF P+   N++ +   WIYE
Sbjct:   57 KPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVESAKKEIGLWFTPEEIQNYKLNAFGWIYE 151          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            RPFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  +++ S    WIYE
Sbjct:   58 RPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            RPFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  +++ S    WIYE
Sbjct:   58 RPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 7.867e-30
Identity = 60/100 (60.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            AE   RPF+G L++Y+ SGPVVAM+W+G  VV+T R +IGATNPA + PGTIRGD  I  G+N+IHGSDSVESA++EIALWF  D  + W+ S   W+YE
Sbjct:   70 AELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            RPFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:   58 RPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA_MOUSE (Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            RPFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:   58 RPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 302
            RPF+  L+EY++SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:   59 RPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
The following BLAST results are available for this feature:
BLAST of CX300853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA_CANFA1.585e-3065.26Nucleoside diphosphate kinase A OS=Canis familiari... [more]
NDKA2_XENLA2.070e-3064.21Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_NEUCR3.531e-3060.61Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDK_EMENI3.531e-3065.26Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDKA_PONAB3.531e-3065.26Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN3.531e-3065.26Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDK3_HUMAN7.867e-3060.00Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDKB_PIG1.027e-2964.21Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDKA_MOUSE1.027e-2964.21Nucleoside diphosphate kinase A OS=Mus musculus GN... [more]
NDKA1_XENLA1.027e-2964.21Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002H11SK PhyRootSw1 Citrus sinensis cDNA clone C08002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300853 ID=CX300853; Name=CX300853; organism=Citrus sinensis; type=EST; length=532bp
CTCGTGCCGAATTCGGCACGAGGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTT
CCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATG
AGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTT
ATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTG
AACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGG
CTGCTTTTATTCTTGTGGTTGCCATATACAATATTTAAGCTTTTTTGTTG
ACTGTATTATGAATTGAGTTTGTTAATGGTTA
back to top