CX300853

Overview
NameCX300853
Unique NameCX300853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_ACISJ (Nucleoside diphosphate kinase OS=Acidovorax sp. (strain JS42) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 254
            RPFF  L++++ SGPV+    EGE  V   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E+A +FP
Sbjct:   57 RPFFKDLVDFMISGPVMVQALEGENAVLKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVAFFFP 134          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_THIDA (Nucleoside diphosphate kinase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 254
            RPFF  L++++ SGPVV  + EGE  +   RT++GAT+P ++ PGTIR D A     N +HGSD+ E+A  EIA +FP
Sbjct:   57 RPFFKDLVDFMVSGPVVLQVLEGEDAIAKNRTLMGATDPKKAEPGTIRADFAESIDANAVHGSDAPETAAVEIAYFFP 134          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_SILPO (Nucleoside diphosphate kinase OS=Silicibacter pomeroyi GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 251
            RPF+  L E+++S PVV  + EGE  +   R ++GATNPA +APGTIR + A   G N +HGSD+ E+A  EIA +F
Sbjct:   57 RPFYDELCEFMSSAPVVVQVLEGENAIAKNREVMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAVEIAYFF 133          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 251
            AE   R FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   52 AEHSERGFFGELVAFMTSGPVVVQVLEGENAIVRNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_PERMH (Nucleoside diphosphate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 251
            RPF+  L E+++SGP+VAM+WEGE  +   R I+GATNP ++  GT+R       G N +HGSDS ESA+ EI  +F
Sbjct:   57 RPFYDELCEFMSSGPIVAMVWEGENAISRIREIMGATNPEEAEEGTLRKLYGTNVGENAVHGSDSPESAKVEIPFFF 133          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_HAEIN (Nucleoside diphosphate kinase OS=Haemophilus influenzae GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 266
            AE   + FF  L+EY+ S P+V  + E E  VK  RT+IG TNP  +A GTIR D A+    N +HGSDS+ESA +EIA +F +  I
Sbjct:   52 AEHQGKEFFVPLVEYMMSSPIVVSVLEKENAVKDYRTLIGTTNPETAAEGTIRKDFALSQRENSVHGSDSIESANREIAYFFTNSEI 138          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_CLOTH (Nucleoside diphosphate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 257
            +PFF  +I+YITSGPVV M+  G  V++  R+++GAT+   S PGTIRGD       N+IH SDS ESA+ EI  +FP+
Sbjct:   55 KPFFNDMIDYITSGPVVVMVLSGYRVIEAVRSMVGATSNFDSKPGTIRGDYGYHRFENLIHASDSCESAEIEIKRFFPE 133          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_BORPE (Nucleoside diphosphate kinase OS=Bordetella pertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 257
            RPFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   57 RPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_BORPA (Nucleoside diphosphate kinase OS=Bordetella parapertussis GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 257
            RPFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   57 RPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_BORBR (Nucleoside diphosphate kinase OS=Bordetella bronchiseptica GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 257
            RPFF  L++++ SGPV   + EGE  ++  R ++GAT+P ++APGTIR D A     N +HGSD+ E+A  E+A +FP+
Sbjct:   57 RPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPE 135          
The following BLAST results are available for this feature:
BLAST of CX300853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ACISJ4.950e-1648.72Nucleoside diphosphate kinase OS=Acidovorax sp. (s... [more]
NDK_THIDA6.465e-1648.72Nucleoside diphosphate kinase OS=Thiobacillus deni... [more]
NDK_SILPO6.465e-1649.35Nucleoside diphosphate kinase OS=Silicibacter pome... [more]
NDK_PSEF56.465e-1648.78Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PERMH6.465e-1649.35Nucleoside diphosphate kinase OS=Persephonella mar... [more]
NDK_HAEIN6.465e-1648.28Nucleoside diphosphate kinase OS=Haemophilus influ... [more]
NDK_CLOTH6.465e-1650.63Nucleoside diphosphate kinase OS=Clostridium therm... [more]
NDK_BORPE6.465e-1645.57Nucleoside diphosphate kinase OS=Bordetella pertus... [more]
NDK_BORPA6.465e-1645.57Nucleoside diphosphate kinase OS=Bordetella parape... [more]
NDK_BORBR6.465e-1645.57Nucleoside diphosphate kinase OS=Bordetella bronch... [more]

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Properties
Property NameValue
Genbank descriptionC08002H11SK PhyRootSw1 Citrus sinensis cDNA clone C08002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300853 ID=CX300853; Name=CX300853; organism=Citrus sinensis; type=EST; length=532bp
CTCGTGCCGAATTCGGCACGAGGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTT
CCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATG
AGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTT
ATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTG
AACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGG
CTGCTTTTATTCTTGTGGTTGCCATATACAATATTTAAGCTTTTTTGTTG
ACTGTATTATGAATTGAGTTTGTTAATGGTTA
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