CX300853

Overview
NameCX300853
Unique NameCX300853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.317e-28
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 302
            AE   +PFF +L++YITSGPVVAM+ EG+  +K  RT++GATNPA++APGTIRGD  +  GRN++H SDS +SA++EI+L+F D  I NW+ +   WIYE
Sbjct:   50 AEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYE 149          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            AE   RPFFG L+ +ITS PVVA++ EG+GVV T R ++G TNP  S  GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:   50 AEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 58/95 (61.05%), Postives = 71/95 (74.74%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 302
            + FF  LIEYITSGPVV+M WEG GVV + R +IGAT+P Q+ PGTIRGD A+ TGRNIIHGSDS E+ ++EIALWF +G +  W     PW+ E
Sbjct:  136 KSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 3
Query:    9 EFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 302
            +   + FF +LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTIRGDLA+ TGRNI+HGSDS E+ ++EI LWF +G +  W S+L  W+ E
Sbjct:  133 DLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.256e-27
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 302
            RPFFGSL+E+I S PVVAM+WEG+G +   R IIGATNP ++ PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:   55 RPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.640e-27
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            AE   RPFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP  SAPG+IRGD  +  GRNIIHGSDSVESA +EIALWF    +  +   +P +YE
Sbjct:   57 AEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.640e-27
Identity = 53/94 (56.38%), Postives = 74/94 (78.72%), Query Frame = 3
Query:   21 RPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 299
            RPFF  L ++++SGPV+AM+WEG+GV++ GR +IGAT+P +S PGTIRGDLA+  GRNIIHGSD  E+A+ EI+LWF P   +++ S+   W+Y
Sbjct:  142 RPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.142e-27
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    9 EFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 302
            E   +PFF  L+ +ITSGPVVAM+WEG GV+   R +IGATNP  + PGT+RGD A+  GRN+IHGSDS E+A++EI LWF     + W+ +L  W+YE
Sbjct:   51 EHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAEREINLWFQTQELVPWEPALTSWVYE 149          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.798e-27
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            AE   +PFF  ++ ++ SGP++A +WEG+ VV+ GRTI+GATNP  SAPGTIRGD  I  GRN+ HGSDSV+SA++EI LWF  +  ++W+S+   WIYE
Sbjct:   54 AEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 153          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.654e-27
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    9 EFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 302
            E   +PFF  L+ Y++SGPV+AM+WEG  VVK  R ++GATNP  S PGTIRGD +I TGRNI+HGSDS+ SA++EI  WF P+    W S+   W+YE
Sbjct:   55 ELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
The following BLAST results are available for this feature:
BLAST of CX300853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_ARCFU4.317e-2856.00Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_GLOVI5.638e-2860.00Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK2_PEA5.638e-2861.05Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH5.638e-2857.58Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK_SYNP21.256e-2756.84Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKC_DICDI1.640e-2759.60Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK3_ARATH1.640e-2756.38Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK_THEEB2.142e-2754.55Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_YEAST2.798e-2755.00Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_BRUMA3.654e-2755.56Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08002H11SK PhyRootSw1 Citrus sinensis cDNA clone C08002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300853 ID=CX300853; Name=CX300853; organism=Citrus sinensis; type=EST; length=532bp
CTCGTGCCGAATTCGGCACGAGGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTT
CCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATG
AGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTT
ATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTG
AACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGG
CTGCTTTTATTCTTGTGGTTGCCATATACAATATTTAAGCTTTTTTGTTG
ACTGTATTATGAATTGAGTTTGTTAATGGTTA
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