CX300833

Overview
NameCX300833
Unique NameCX300833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: Y1656_METJA (Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii GN=MJ1656 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  262 INFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 471
            +N +C   +V+GEI+QK +TK+MIF +  L+  ++SIMTL+ GD+I TGTP GVG +K G  +   I G+
Sbjct:  160 LNIEC---RVNGEIKQKSNTKNMIFDVYELVEFVASIMTLYPGDIISTGTPPGVGELKAGDVVECEIEGI 226          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: HPAG_SALDU (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase OS=Salmonella dublin GN=hpaG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  289 VDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 471
            V+GE+RQ+G+T D+IF IP+LIS++S  MTL  GD+I TGTP+G+  V  G ++   I G+
Sbjct:  355 VNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIATGTPKGLSDVVPGDEVVLEIKGV 415          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: HPCE_ECOLX (Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase OS=Escherichia coli GN=hpcE PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 471
            +PK A+PDPHNL L                                      V+GE+RQ+G+T D+IF +P+LI+++S  MTL  GD+I TGTP+G+    VG ++   + G+
Sbjct:  338 VPKEAIPDPHNLTL-----------------------------------RTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLS--DVGDEVVVEVEGV 413          
The following BLAST results are available for this feature:
BLAST of CX300833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
Y1656_METJA1.482e-1147.14Uncharacterized protein MJ1656 OS=Methanocaldococc... [more]
HPAG_SALDU4.311e-1150.824-hydroxyphenylacetate degradation bifunctional is... [more]
HPCE_ECOLX9.604e-1133.63Homoprotocatechuate catabolism bifunctional isomer... [more]

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Properties
Property NameValue
Genbank descriptionC08002G02SK PhyRootSw1 Citrus sinensis cDNA clone C08002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300833 ID=CX300833; Name=CX300833; organism=Citrus sinensis; type=EST; length=568bp
GCACGAGGGCACCCTTTACTTGTATCTGCTAGTAGAAAAGAAGAGAGGAA
GAGAATTTTATTTTCTATTGCCAATTTTGTTCTGTGTTTACTAAATACAC
TCCTTTTTGACTTGTTTAAAATATATTTGCAGCTACCAAAGTCAGCAGTG
CCTGACCCTCACAACTTGGAACTATGGTTAACGGTTCATAATCATTACTC
TTTACTCTCATATTTCTTTATGGCTTTTGTCAAAGCTTCAAATTTGTTTT
TCACTGGGTGGATTAACTTTAAATGTGTTTCACTGCAGGTTGATGGAGAG
ATTCGACAGAAAGGCTCCACTAAGGATATGATTTTTATGATACCATATCT
AATTAGCCACATAAGTTCAATTATGACACTTTTTGAAGGAGATGTCATAT
TAACAGGCACTCCACAGGGCGTTGGTCCTGTAAAAGTTGGTCAAAAGATA
ACAGCTGGTATAACGGGCCTCCTGGATGTACACTTTGATATTGAAAAACG
CCGAAGGCCAGGAAGTGCTTGAACTTATGATGTCCACTCCACTGCAACTG
CATTTCAAGCAAAATGTA
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