CX300757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16 Identity = 46/140 (32.86%), Postives = 84/140 (60.00%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTK 435 V G N + F+GM+++R+K+ +IRKW TLIEA++ + T DG R+F A TKK+ + + YA++ +++ IRK++ E E ++++LV+ + + + E E +C I+P+ ++I KVK +K + + K Sbjct: 98 VCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVK--VLSTEGLAKEFETRCNEIYPIFAMII-KVKPIKNMQCIIVK 232
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15 Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 1 Query: 13 DVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420 DV+G N T F GM + R + SL+R+ T I+ ++ T DGY LR+ A+A ++ Q+ Q R IRK M EI+ ++A + + K+ V + + I AEI K+ + I+PL+ IRK+K+L++P+ Sbjct: 72 DVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR----------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESV--NGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15 Identity = 48/151 (31.79%), Postives = 88/151 (58.28%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLK-KPKFDVTKLMELHGDTTA 465 V G +T F G+++TRD + SL+RK + + A V+V+T DG+V+R+ +A T + A +S +RK+MF+++T +AS+ D+ + +++ + + A++ + I PL+ V I K+K+LK P+ + T + EL +T A Sbjct: 82 VDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAITTHRIGSAQKSA----------MRKRMFDVLTRKASEMDIGQFLKEVL--EGLLTADLFVAGKKIAPLRKVEIAKIKVLKYPPEEEQTTVKELTTETVA 220
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14 Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 1 Query: 13 DVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420 DV+G N T F GM + R + SL+R+ T I+ ++ T DGY LR+ A+A ++ Q+ Q R IRK M EI+ ++A + + K+ V + A I AEI K+ + I+PL+ IRK+K+L +P+ Sbjct: 74 DVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMRR----------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLE--AVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14 Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 1 Query: 13 DVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420 DV+G N T F GM + R + SL+R+ T I+ ++ T DGY LR+ A+ ++ Q+ Q R IRK M EI+ ++A + + K+ V + A I AEI K+ + I+PL+ IRK+K+L +P+ Sbjct: 73 DVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAARR----------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLE--AVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13 Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417 V+G +LT F G +++RD + SL+R+ + I+A DV T DGYVLR+ +A T T A Q IRK ++ I++ AS+ E VQ + + +I ++ + I+PL+ V + K K+LK P Sbjct: 71 VEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT----------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVF--GKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13 Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417 V G N T F ++TR+ L SL R+ + IE VDV T DGY LR+ ++ FT ++ ++ Q R IR M +I+ E+AS + + +Q+ + + AEI K + I+P++ V IRK+++L +P Sbjct: 76 VAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVRR----------CKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVL--GKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12 Identity = 44/134 (32.84%), Postives = 74/134 (55.22%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417 + G LT F G ++ RD + SL+R+ + I+ D+ T DGYVLR+ +A T + N + Q + IR+ M E + ++AS+ L ELVQ+ +++ I EI + + I+P++ V + K K+L P Sbjct: 73 IDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN----------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSY--KISNEIAELARKIYPIRRVEVYKTKLLLIP 194
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12 Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417 V G T F G+++TRD + SL+RK + + A VDV+T DG+V+R+ +A T + A +S IRK++ E ++ +AS D+ + +++ + S+ AE+ + I PL+ V + K+K+L+ P Sbjct: 82 VDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAHRIGTAQKSA----------IRKRVAEALSRKASDSDVGQFLKEVL--EGSLAAELFVAGKKIAPLRKVEVAKIKVLRYP 203
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRCJ (30S ribosomal protein S3Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12 Identity = 41/134 (30.60%), Postives = 77/134 (57.46%), Query Frame = 1 Query: 16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417 V G N T F G+++TRD L SLIR+ + I A DV+T DG+V+R+ + T + A +S IRK+ E++T++A++ D+ + +++ + ++ A++ + I P++ V + K+K+L+ P Sbjct: 82 VDGLNASTRFKGLELTRDYLRSLIRRGTSKIMAITDVKTKDGWVMRVAVLGVTTHRVGTAQKSA----------IRKRFIEVVTKKAAEADIGQFLKEVL--EGTLAADLFIAGKKIAPMRKVEVAKIKVLRYP 203 The following BLAST results are available for this feature:
BLAST of CX300757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 181
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300757 ID=CX300757; Name=CX300757; organism=Citrus sinensis; type=EST; length=681bpback to top |