CX300757

Overview
NameCX300757
Unique NameCX300757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 46/140 (32.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTK 435
            V G N  + F+GM+++R+K+  +IRKW TLIEA++ + T DG   R+F  A TKK+   + +   YA++ +++ IRK++ E   E     ++++LV+  +   + +  E E +C  I+P+  ++I KVK +K  +  + K
Sbjct:   98 VCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVK--VLSTEGLAKEFETRCNEIYPIFAMII-KVKPIKNMQCIIVK 232          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   13 DVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420
            DV+G N  T F GM + R  + SL+R+  T I+   ++ T DGY LR+ A+A   ++           Q+ Q R IRK M EI+ ++A + + K+ V + +     I AEI K+ + I+PL+   IRK+K+L++P+
Sbjct:   72 DVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR----------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESV--NGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 48/151 (31.79%), Postives = 88/151 (58.28%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLK-KPKFDVTKLMELHGDTTA 465
            V G   +T F G+++TRD + SL+RK  + + A V+V+T DG+V+R+  +A T  +   A +S           +RK+MF+++T +AS+ D+ + +++ +     + A++    + I PL+ V I K+K+LK  P+ + T + EL  +T A
Sbjct:   82 VDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAITTHRIGSAQKSA----------MRKRMFDVLTRKASEMDIGQFLKEVL--EGLLTADLFVAGKKIAPLRKVEIAKIKVLKYPPEEEQTTVKELTTETVA 220          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   13 DVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420
            DV+G N  T F GM + R  + SL+R+  T I+   ++ T DGY LR+ A+A   ++           Q+ Q R IRK M EI+ ++A + + K+ V +  A    I AEI K+ + I+PL+   IRK+K+L +P+
Sbjct:   74 DVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMRR----------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLE--AVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   13 DVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420
            DV+G N  T F GM + R  + SL+R+  T I+   ++ T DGY LR+ A+    ++           Q+ Q R IRK M EI+ ++A + + K+ V +  A    I AEI K+ + I+PL+   IRK+K+L +P+
Sbjct:   73 DVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAARR----------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLE--AVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417
            V+G  +LT F G +++RD + SL+R+  + I+A  DV T DGYVLR+  +A T          T  A   Q   IRK ++ I++  AS+    E VQ  +     +  +I ++ + I+PL+ V + K K+LK P
Sbjct:   71 VEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT----------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVF--GKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417
            V G N  T F   ++TR+ L SL R+  + IE  VDV T DGY LR+ ++ FT ++           ++ Q R IR  M +I+ E+AS  +  + +Q+ +     + AEI K  + I+P++ V IRK+++L +P
Sbjct:   76 VAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVRR----------CKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVL--GKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 44/134 (32.84%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417
            + G   LT F G ++ RD + SL+R+  + I+   D+ T DGYVLR+  +A T  + N          + Q + IR+ M E + ++AS+  L ELVQ+ +++   I  EI +  + I+P++ V + K K+L  P
Sbjct:   73 IDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN----------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSY--KISNEIAELARKIYPIRRVEVYKTKLLLIP 194          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417
            V G    T F G+++TRD + SL+RK  + + A VDV+T DG+V+R+  +A T  +   A +S           IRK++ E ++ +AS  D+ + +++ +    S+ AE+    + I PL+ V + K+K+L+ P
Sbjct:   82 VDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAHRIGTAQKSA----------IRKRVAEALSRKASDSDVGQFLKEVL--EGSLAAELFVAGKKIAPLRKVEVAKIKVLRYP 203          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_PYRCJ (30S ribosomal protein S3Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 41/134 (30.60%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKP 417
            V G N  T F G+++TRD L SLIR+  + I A  DV+T DG+V+R+  +  T  +   A +S           IRK+  E++T++A++ D+ + +++ +    ++ A++    + I P++ V + K+K+L+ P
Sbjct:   82 VDGLNASTRFKGLELTRDYLRSLIRRGTSKIMAITDVKTKDGWVMRVAVLGVTTHRVGTAQKSA----------IRKRFIEVVTKKAAEADIGQFLKEVL--EGTLAADLFIAGKKIAPMRKVEVAKIKVLRYP 203          
The following BLAST results are available for this feature:
BLAST of CX300757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_ENTBH2.180e-1632.8640S ribosomal protein S1 OS=Enterocytozoon bieneus... [more]
RS3A_PYRFU5.370e-1535.2930S ribosomal protein S3Ae OS=Pyrococcus furiosus ... [more]
RS3A_PYRIL9.159e-1531.7930S ribosomal protein S3Ae OS=Pyrobaculum islandic... [more]
RS3A_PYRHO3.481e-1436.0330S ribosomal protein S3Ae OS=Pyrococcus horikoshi... [more]
RS3A_PYRAB3.481e-1435.2930S ribosomal protein S3Ae OS=Pyrococcus abyssi GN... [more]
RS3A_SULTO2.947e-1334.3330S ribosomal protein S3Ae OS=Sulfolobus tokodaii ... [more]
RS3A_ARCFU5.026e-1334.3330S ribosomal protein S3Ae OS=Archaeoglobus fulgid... [more]
RS3A_DESK11.120e-1232.8430S ribosomal protein S3Ae OS=Desulfurococcus kamc... [more]
RS3A_THENV1.910e-1232.0930S ribosomal protein S3Ae OS=Thermoproteus neutro... [more]
RS3A_PYRCJ2.494e-1230.6030S ribosomal protein S3Ae OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionC08001H07SK PhyRootSw1 Citrus sinensis cDNA clone C08001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300757 ID=CX300757; Name=CX300757; organism=Citrus sinensis; type=EST; length=681bp
CTCGTCGCTGAGGATGTTCAAGGCACCAATGTCTTGACCAACTTCCATGG
CATGGATATCACCCGTGATAAATTATGCTCTTTAATCCGCAAATGGCAGA
CTTTAATCGAGGCTAGCGTCGACGTCCGAACAACTGACGGATATGTCTTA
AGACTCTTCGCCATCGCCTTCACCAAGAAACAACAGAACCAAGCTGCTCG
CTCCACTTGCTATGCTCAATCTGGTCAAGTCAGAAATATCCGCAAGAAGA
TGTTCGAGATCATGACAGAGGAAGCTTCCAAGTGCGACTTAAAGGAACTT
GTTCAGAAATTCATCGCTCACCCTGACTCCATCGGTGCTGAGATCGAGAA
GAAGTGTCAATCCATCTTCCCTCTTCAAAACGTCCTCATCCGCAAGGTGA
AGATGTTGAAGAAGCCAAAGTTCGATGTGACAAAGTTAATGGAATTACAC
GGTGACACCACCGCTGAGGACAGTGGCGTGGCTATTGATAAGGCCGCCGC
TGCTAACACTGTCAAGGCTTTGAAGGGATCTGGAGGCAGATTGTAAGTGA
GATTGATGATATAAACGACACCTTCTCCACATCATCGCTCTATTTGTTGG
TACTACGATTCAATAACAATACTTCCACAACTAATAAAACTAATAACAAA
AAACCTCATAAAAAAAAAAAAAAAAAAAAAA
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