CX300757

Overview
NameCX300757
Unique NameCX300757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_METJA (30S ribosomal protein S3Ae OS=Methanocaldococcus jannaschii GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:   16 VQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPK 420
            V G   +  ++G D TR+ + S IR+ ++ I+A +DV+T DG+ +R  A+  T  + N   +S          +IRKKM EI+   A +    + VQ  +     +  +I+ +C+ IFP++NV+I K ++L   K
Sbjct:   80 VTGNKAIAQYYGHDTTREFMKSQIRRRRSRIDAILDVKTQDGHKIRTKAMVLTAYRANTKQKS----------DIRKKMEEIIKAMAKEKTFPQYVQAMLF--GEMAEKIKNECKKIFPIKNVIIYKSEVLSLAK 202
The following BLAST results are available for this feature:
BLAST of CX300757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_METJA8.024e-1131.1130S ribosomal protein S3Ae OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionC08001H07SK PhyRootSw1 Citrus sinensis cDNA clone C08001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300757 ID=CX300757; Name=CX300757; organism=Citrus sinensis; type=EST; length=681bp
CTCGTCGCTGAGGATGTTCAAGGCACCAATGTCTTGACCAACTTCCATGG
CATGGATATCACCCGTGATAAATTATGCTCTTTAATCCGCAAATGGCAGA
CTTTAATCGAGGCTAGCGTCGACGTCCGAACAACTGACGGATATGTCTTA
AGACTCTTCGCCATCGCCTTCACCAAGAAACAACAGAACCAAGCTGCTCG
CTCCACTTGCTATGCTCAATCTGGTCAAGTCAGAAATATCCGCAAGAAGA
TGTTCGAGATCATGACAGAGGAAGCTTCCAAGTGCGACTTAAAGGAACTT
GTTCAGAAATTCATCGCTCACCCTGACTCCATCGGTGCTGAGATCGAGAA
GAAGTGTCAATCCATCTTCCCTCTTCAAAACGTCCTCATCCGCAAGGTGA
AGATGTTGAAGAAGCCAAAGTTCGATGTGACAAAGTTAATGGAATTACAC
GGTGACACCACCGCTGAGGACAGTGGCGTGGCTATTGATAAGGCCGCCGC
TGCTAACACTGTCAAGGCTTTGAAGGGATCTGGAGGCAGATTGTAAGTGA
GATTGATGATATAAACGACACCTTCTCCACATCATCGCTCTATTTGTTGG
TACTACGATTCAATAACAATACTTCCACAACTAATAAAACTAATAACAAA
AAACCTCATAAAAAAAAAAAAAAAAAAAAAA
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