CX300756

Overview
NameCX300756
Unique NameCX300756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:  420 FPGT-FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 593
            F GT ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL
Sbjct:   80 FEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTIL 138
[Close]
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  432 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 593
            FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL
Sbjct:   78 FKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTIL 131
[Close]
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  432 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 593
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTIL 132
[Close]
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  432 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 593
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTIL 132
[Close]
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  432 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 593
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTIL 132
The following BLAST results are available for this feature:
BLAST of CX300756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBC19_ARATH6.175e-1154.24Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC11_SCHPO6.175e-1150.00Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2C_MOUSE8.065e-1150.00Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA8.065e-1150.00Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN8.065e-1150.00Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001H06SK PhyRootSw1 Citrus sinensis cDNA clone C08001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300756 ID=CX300756; Name=CX300756; organism=Citrus sinensis; type=EST; length=598bp
ATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAGGTGGG
TATTTGATTATCTTTGATTTTTACAAAATATTTATGCTTTTAATTTTACT
TTCATTCAGCTGTAAAAATGTAAAACTTTTGTTAAGCTGAATTATTGGTT
TTGCCTAATATTTGATTGTAGCTTATTTTTGTTGAATTTTTGTTACCTAA
TCGTGGACAATCTGCTTCTGTAATTAATCATATGTTAGGTTGTATGTTAT
GGTATACTTGCTTTGATTTACATTGTAGGCTTAAAATAAAGACTCCCACT
AAACCGGAACCACCATTAAGTAACATGATTGCCTATGACTTATCATATTT
CGTTATAGCGTCTCTTTTTCTTGAAAGTTATAGGTTTTTGCAAGTGTTGT
TTTAGCTATTTCTTGAACTTTTCCAGGTACGTTCAAGTTGACTCTTCAGT
TTACAGAGGATTATCCGAATAAACCTCCAACAGTTCGGTTCGTTTCACGG
ATGTTTCATCCAAATATCTATGCGGATGGAAGTATCTGCCTGGATATATT
ACAAAATCAGTGGAGTCCTATATATGATGTTGCAGCTATACTGACCTC
back to top