CX300755

Overview
NameCX300755
Unique NameCX300755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L V  TPN  +PL    + ++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:  142 LEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 203          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            D  L +V T N  +PL    + +L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR + AK
Sbjct:  138 DGKLEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIETFWN-VINWDEANKRFDAAK 202          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +  TPN  +PL    + +L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V++    AK
Sbjct:  141 LEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVARLYSEAK 202          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            D  L ++KT NA  P+V     +L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:  146 DNKLQIIKTSNAGTPIVNFMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVEDNL 207          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +V TPN  NP+    + +L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++     K
Sbjct:  138 LEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +V TPN  NP+    + +L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++     K
Sbjct:  138 LEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 190
            +  L V+  PN  +PL+  Y  +L IDVWEHAYYL +QNRR +Y+  F+ K ++WE VSK
Sbjct:  138 ESGLKVISMPNQDSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFL-KALNWEEVSK 196          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +V TPN  NPL    + +L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  + AK
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +V TPN  NPL    + +L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +     K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +V TPN  NPL    + +L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +     K
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
The following BLAST results are available for this feature:
BLAST of CX300755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SODM1_BACAN4.918e-1149.21Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_LISMO6.423e-1146.97Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_BACSU6.423e-1149.21Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODF_RICPR6.423e-1143.55Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODM_STAES8.388e-1147.62Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ8.388e-1147.62Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_BORBU8.388e-1150.00Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODM2_STAAB8.388e-1147.62Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM1_STAAW8.388e-1149.21Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS8.388e-1149.21Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC08001H05SK PhyRootSw1 Citrus sinensis cDNA clone C08001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300755 ID=CX300755; Name=CX300755; organism=Citrus sinensis; type=EST; length=540bp
ATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCA
ATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGATGTATGGGAG
CATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATTACATATCAGT
TTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAAA
CTGCCAAAGCTCCAGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAG
ATGAAGAGAAAATAAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGC
TGATGATACTTTGCTGAACAATAAAAATAGTTAGGTCTTTGGTACACACT
ACTTTGTGATTAGTAATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAA
CAATCAGGGTATAATAAAACCTATCAAAGTATATGTATGAGTTACTTTTT
GAAAATAGTTTTTGGATGACTAATAATACTTTCAGGCCTGTTTAGTATGT
TGAATACTATTATCTTGGACTATAAAAAAAAAAAAAAAAA
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