CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.244e-82
Identity = 138/156 (88.46%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.931e-82
Identity = 139/156 (89.10%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+V RAVCM+SN+TAIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.931e-82
Identity = 138/156 (88.46%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SY+P+ISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYSPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.931e-82
Identity = 138/156 (88.46%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE  SRIDHKFDLMY KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.931e-82
Identity = 138/156 (88.46%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QF DWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFADWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 3.828e-82
Identity = 137/156 (87.82%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVA+IKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE  SRIDHKFDLMYAKRAF+HWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 5.000e-82
Identity = 139/156 (89.10%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAPIISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+V RAVCM+SN+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 5.000e-82
Identity = 139/156 (89.10%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAPIISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+V RAVCM+SN+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 8.529e-82
Identity = 137/156 (87.82%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCM+SN+T++ E  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 8.529e-82
Identity = 137/156 (87.82%), Postives = 150/156 (96.15%), Query Frame = 3 
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCM+SN+T++ E  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA1_ANEPH2.244e-8288.46Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA_OXYGR2.931e-8289.10Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_CHLVU2.931e-8288.46Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA4_GOSHI2.931e-8288.46Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_GOSHI2.931e-8288.46Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI3.828e-8287.82Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_TOXGO5.000e-8289.10Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA5.000e-8289.10Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA3_HORVU8.529e-8287.82Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA2_MAIZE8.529e-8287.82Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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