CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.900e-81
Identity = 137/156 (87.82%), Postives = 152/156 (97.44%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            TSYAP+ISAEKAYHEQLSV EI+N+VFEP++M+TKCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+TAIAE  +RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 TSYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.900e-81
Identity = 136/156 (87.18%), Postives = 150/156 (96.15%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKA+HEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.900e-81
Identity = 137/156 (87.82%), Postives = 149/156 (95.51%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPP VVPGGDLA+VQRAVCM+SN+T++ E  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPGVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.900e-81
Identity = 136/156 (87.18%), Postives = 150/156 (96.15%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKA+HEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.900e-81
Identity = 137/156 (87.82%), Postives = 150/156 (96.15%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAPIISAEKAYHEQLSV EITN+ FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN++VATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM+SN+TAI E  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 3.241e-81
Identity = 139/156 (89.10%), Postives = 149/156 (95.51%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACCMMYRGDVVPKDVN+AVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLA+V RAVCM+SN+TAIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 3.241e-81
Identity = 138/156 (88.46%), Postives = 149/156 (95.51%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISA KAYHEQLSV EITN+VFEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRTVQFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCM+SN TA+AE  SRIDHKFDLMYAK AFVHWYVGEGMEEGEFSEAREDL
Sbjct:  186 SSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKLAFVHWYVGEGMEEGEFSEAREDL 341          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 4.233e-81
Identity = 136/156 (87.18%), Postives = 152/156 (97.44%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            T+YAP+ISAEKAYHEQLSV EI+N+VFEP++M+TKCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+TAIAE  +RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 TTYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 7.220e-81
Identity = 138/156 (88.46%), Postives = 149/156 (95.51%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITN+VFEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AV TIKTKRTVQFVD CPTGFKCGINYQPP+VVPGGDLA+VQRAVCM+SN TA+AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVVTIKTKRTVQFVDXCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 9.429e-81
Identity = 137/155 (88.39%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N L KCDPRHGKYMACCM+YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA_TRYBR1.900e-8187.82Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA6_ARATH1.900e-8187.18Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_HORVU1.900e-8187.82Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA2_ARATH1.900e-8187.18Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_CHLRE1.900e-8187.82Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA_EUPOC3.241e-8189.10Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA2_ANEPH3.241e-8188.46Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA_TRYCR4.233e-8187.18Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA_AVESA7.220e-8188.46Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA1_APLCA9.429e-8188.39Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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